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用于鉴定从麦德林(哥伦比亚)甲癣和皮肤癣菌病病例中分离出的菌株的ITS rDNA基因分析与基质辅助激光解吸电离飞行时间质谱法比较

ITS rDNA Gene Analysis Versus MALDI-TOF MS For Identification of Isolated from Onychomycosis and Dermatomycosis Cases in Medellin (Colombia).

作者信息

Flórez-Muñoz Sindy V, Gómez-Velásquez Juan C, Loaiza-Díaz Natalia, Soares Célia, Santos Carla, Lima Nelson, Mesa-Arango Ana C

机构信息

Grupo de Investigación Dermatológica, Instituto de Investigaciones Médicas, Facultad de Medicina, Universidad de Antioquia, Avenida Juan del Corral, 050010 Medellín, Colombia.

Laboratorio Clínico PROLAB, Miembro del Grupo Synlab, Calle 19 A, 050021 Medellín, Colombia.

出版信息

Microorganisms. 2019 Sep 1;7(9):306. doi: 10.3390/microorganisms7090306.

Abstract

Within the genus, , , and have been recognized. Although these species are frequently found in soil, has been identified as an etiologic agent of onychomycosis or dermatomycosis, and has been identified as an etiologic agent of an ocular lesion. All these species can be cultured , but their morphological identification by macroscopic and microscopic traits is difficult and imprecise due to their similarity. In this study, 34 isolates of spp. from 32 onychomycosis and two dermatomycosis cases in Medellin (Colombia) were identified at the species level using sequencing of the ITS1+5.8S+ITS2 nuclear rDNA region and MALDI-TOF mass spectrometry (MS). strain MUM 17.21 was used to construct the reference spectrum in the in-house library to identify the clinical isolates by MALDI-TOF MS. Additionally, PPC-216 and PLAB-055 strains were used to validate the in-house constructed reference spectra. Although four groups were observed in the dendrogram obtained from the proteins of each isolate profile, MALDI-TOF MS and sequencing results are in accordance, since all isolates were identified as .

摘要

在该属中,已识别出……、……和……。尽管这些物种常在土壤中发现,但……已被确定为甲癣或皮肤癣菌病的病原体,而……已被确定为一种眼部病变的病原体。所有这些物种都可以培养,但其通过宏观和微观特征进行形态学鉴定很困难且不准确,因为它们很相似。在本研究中,使用ITS1 + 5.8S + ITS2核糖体DNA区域测序和基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS),对来自麦德林(哥伦比亚)32例甲癣和2例皮肤癣菌病病例的34株……菌进行了种水平鉴定。使用……菌株MUM 17.21构建内部库中的参考谱,以通过MALDI-TOF MS鉴定临床分离株。此外,使用PPC-216和PLAB-055菌株验证内部构建的参考谱。尽管从每个分离株谱的蛋白质获得的树状图中观察到四组,但MALDI-TOF MS和测序结果一致,因为所有分离株均被鉴定为……。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/604d/6780217/3f2f23500c73/microorganisms-07-00306-g001.jpg

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