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在优良水稻品种IR64的高代回交群体中检测抽穗期QTL

Detection of heading date QTLs in advanced-backcross populations of an elite rice cultivar, IR64.

作者信息

Nonoue Yasunori, Hori Kiyosumi, Ono Nozomi, Shibaya Taeko, Ogiso-Tanaka Eri, Mizobuchi Ritsuko, Fukuoka Shuichi, Yano Masahiro

机构信息

National Agriculture and Food Research Organization (NARO), Institute of Crop Science, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8518, Japan.

National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

出版信息

Breed Sci. 2019 Jun;69(2):352-358. doi: 10.1270/jsbbs.18172. Epub 2019 May 9.

DOI:10.1270/jsbbs.18172
PMID:31481845
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6711732/
Abstract

IR64 is one of the world's most popular rice cultivars. To collect genetic factors involved in controlling its heading date, we developed 70 reciprocal advanced-backcross populations with a total of 6284 individuals at the BCF generation from crosses between Koshihikari and IR64. We detected 29 QTLs associated with heading date on chromosomes 3, 5-8, 10, and 12. Twenty QTLs were located in the same chromosome regions as previously isolated heading date genes (, , , , , , and ). The rest were located in other chromosome regions. We found more number of QTLs than previous studies using mapping populations of IR64. Fine mapping in additional advanced-backcross populations clearly revealed that QTLs on the long arm of chromosome 7 are overlapping and seem to be a novel genetic factor for heading date because of their different locations from . Our results suggest that the difference in heading date between IR64 and Koshihikari is genetically controlled by many factors, and that a non-functional allele of contributes to early heading of IR64 in the genetic background of functional alleles of other heading date QTLs and genes such as and .

摘要

IR64是世界上最受欢迎的水稻品种之一。为了收集控制其抽穗期的遗传因素,我们从越光和IR64的杂交后代中,在回交一代(BCF)培育了70个相互回交高世代群体,共6284个个体。我们在第3、5至8、10和12号染色体上检测到29个与抽穗期相关的数量性状基因座(QTL)。其中20个QTL位于与先前分离的抽穗期基因相同的染色体区域(、、、、、和)。其余的位于其他染色体区域。我们发现,与之前利用IR64作图群体的研究相比,检测到的QTL数量更多。在另外的回交高世代群体中的精细定位清楚地表明,第7号染色体长臂上的QTL相互重叠,由于其与不同的位置,似乎是一个控制抽穗期的新遗传因素。我们的结果表明,IR64和越光之间抽穗期的差异受许多因素的遗传控制,并且在其他抽穗期QTL和基因(如和)功能等位基因的遗传背景下,的一个无功能等位基因导致了IR64的早抽穗。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6408/6711732/01af9a468050/69_18172_2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6408/6711732/0f980d18e131/69_18172_1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6408/6711732/01af9a468050/69_18172_2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6408/6711732/0f980d18e131/69_18172_1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6408/6711732/01af9a468050/69_18172_2.jpg

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本文引用的文献

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2
IR64: a high-quality and high-yielding mega variety.IR64:一个优质高产的超级品种。
Rice (N Y). 2018 Apr 9;11(1):18. doi: 10.1186/s12284-018-0208-3.
3
Genomic adaptation of flowering-time genes during the expansion of rice cultivation area.在水稻种植面积扩大过程中,开花时间基因的基因组适应性。
野生和栽培等位基因对日本晴和IR36两个品种之间回交群体中水稻表型性状的影响。
Breed Sci. 2023 Sep;73(4):373-381. doi: 10.1270/jsbbs.22095. Epub 2023 Sep 9.
4
Comparative transcriptome analysis of the mechanism difference in heat stress response between rice cultivar "IR64" and cultivar "Koshihikari" at the seedling stage.水稻品种“IR64”和“越光”在苗期热胁迫响应机制差异的比较转录组分析
Front Genet. 2023 Apr 21;14:1135577. doi: 10.3389/fgene.2023.1135577. eCollection 2023.
Plant J. 2018 Jun;94(5):895-909. doi: 10.1111/tpj.13906. Epub 2018 Apr 21.
4
A heading date QTL, qHD7.2, from wild rice (Oryza rufipogon) delays flowering and shortens panicle length under long-day conditions.来自野生稻(普通野生稻)的一个抽穗期QTL,qHD7.2,在长日照条件下延迟开花并缩短穗长。
Sci Rep. 2018 Feb 13;8(1):2928. doi: 10.1038/s41598-018-21330-z.
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