Suppr超能文献

模拟群体感应动力学及其干扰 。 你提供的原文似乎不完整,“on”后面缺少具体内容。

Modeling Quorum Sensing Dynamics and Interference on .

作者信息

Torres-Cerna Carlos E, Morales J Alejandro, Hernandez-Vargas Esteban A

机构信息

Computer Science Department, Universidad de Guadalajara, Guadalajara, Mexico.

Frankfurt Institute for Advanced Studies, Frankfurt, Germany.

出版信息

Front Microbiol. 2019 Aug 20;10:1835. doi: 10.3389/fmicb.2019.01835. eCollection 2019.

Abstract

Bacteria control the expression of specific genes by Quorum Sensing (QS). This works using small signaling molecules called Autoinducers (AIs), for example, the Autoinducer-2 (AI-2). In this work, we present a mathematical model that represents the AI-2 dynamics on , which is linked to the cell growth and the operon expression. The model is adjusted using experimental data. Our results suggest that the extracellular AI-2 activity level depends on the cell growth rate, and this activity depends on the cell exponential growth phase. The model was adapted to simulate the interference of QS mechanisms in a co-culture of two strains: a wild type strain and a knock out strain that detects AI-2 but does not produce it. Co-culture simulations unveiled two conditions to avoid the QS on the wild strain: when the knock out takes control of the growth medium and overcomes the wild strain, or when is pre-cultured to its mid-exponential phase and then added to the wild strain culture. Model simulations unveiled new insights about the interference of bacterial communication and offer new tools for QS control.

摘要

细菌通过群体感应(QS)来控制特定基因的表达。这一过程利用称为自诱导物(AIs)的小信号分子来实现,例如自诱导物-2(AI-2)。在这项工作中,我们提出了一个数学模型,该模型描述了AI-2在 上的动态变化,它与细胞生长和 操纵子表达相关联。该模型通过实验数据进行了调整。我们的结果表明,细胞外AI-2活性水平取决于细胞生长速率,并且这种活性取决于细胞指数生长期。该模型经过调整,用于模拟群体感应机制在两种 菌株共培养中的干扰情况:一种是野生型菌株,另一种是敲除菌株,该敲除菌株能检测AI-2但不产生它。共培养模拟揭示了两种避免野生菌株群体感应的条件:当敲除菌株控制生长培养基并战胜野生菌株时,或者当 将其预培养至指数中期阶段然后添加到野生菌株培养物中时。模型模拟揭示了关于细菌通讯干扰的新见解,并为群体感应控制提供了新工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/20e3/6710385/e95b19d2060d/fmicb-10-01835-g0001.jpg

相似文献

1
Modeling Quorum Sensing Dynamics and Interference on .
Front Microbiol. 2019 Aug 20;10:1835. doi: 10.3389/fmicb.2019.01835. eCollection 2019.
2
Autoinducer-2 Quorum Sensing Contributes to Regulation of Microcin PDI in .
Front Microbiol. 2017 Dec 22;8:2570. doi: 10.3389/fmicb.2017.02570. eCollection 2017.
4
The effect of quorum sensing system for growth competitiveness on Shigella flexneri.
Yi Chuan. 2015 May;37(5):487-93. doi: 10.16288/j.yczz.15-002.
5
Regulation of uptake and processing of the quorum-sensing autoinducer AI-2 in Escherichia coli.
J Bacteriol. 2005 Jan;187(1):238-48. doi: 10.1128/JB.187.1.238-248.2005.
6
LsrR-binding site recognition and regulatory characteristics in Escherichia coli AI-2 quorum sensing.
Cell Res. 2009 Nov;19(11):1258-68. doi: 10.1038/cr.2009.91. Epub 2009 Jul 28.
8
luxS-based quorum-sensing signaling affects Biofilm formation in Streptococcus mutans.
J Mol Microbiol Biotechnol. 2009;17(1):12-9. doi: 10.1159/000159193. Epub 2008 Sep 26.
9
Mathematical model of LsrR-binding and derepression in Escherichia coli K12.
J Bioinform Comput Biol. 2017 Feb;15(1):1650039. doi: 10.1142/S0219720016500396. Epub 2016 Nov 16.

引用本文的文献

5
Quantifying the optimal strategy of population control of quorum sensing network in Escherichia coli.
NPJ Syst Biol Appl. 2021 Sep 2;7(1):35. doi: 10.1038/s41540-021-00196-4.
6
Effects of Natural Products on Bacterial Communication and Network-Quorum Sensing.
Biomed Res Int. 2020 May 24;2020:8638103. doi: 10.1155/2020/8638103. eCollection 2020.
7
Toward fine-tuned metabolic networks in industrial microorganisms.
Synth Syst Biotechnol. 2020 Jun 5;5(2):81-91. doi: 10.1016/j.synbio.2020.05.002. eCollection 2020 Jun.

本文引用的文献

1
Autoinducer 2-Dependent Escherichia coli Biofilm Formation Is Enhanced in a Dual-Species Coculture.
Appl Environ Microbiol. 2018 Feb 14;84(5). doi: 10.1128/AEM.02638-17. Print 2018 Mar 1.
2
Analysis of Practical Identifiability of a Viral Infection Model.
PLoS One. 2016 Dec 30;11(12):e0167568. doi: 10.1371/journal.pone.0167568. eCollection 2016.
3
Mathematical model of LsrR-binding and derepression in Escherichia coli K12.
J Bioinform Comput Biol. 2017 Feb;15(1):1650039. doi: 10.1142/S0219720016500396. Epub 2016 Nov 16.
5
Bacterial quorum sensing: its role in virulence and possibilities for its control.
Cold Spring Harb Perspect Med. 2012 Nov 1;2(11):a012427. doi: 10.1101/cshperspect.a012427.
6
LuxS influences Escherichia coli biofilm formation through autoinducer-2-dependent and autoinducer-2-independent modalities.
FEMS Microbiol Ecol. 2013 Mar;83(3):778-91. doi: 10.1111/1574-6941.12034. Epub 2012 Nov 26.
7
AI-2-mediated signalling in bacteria.
FEMS Microbiol Rev. 2013 Mar;37(2):156-81. doi: 10.1111/j.1574-6976.2012.00345.x. Epub 2012 Jul 16.
8
Phosphoenolpyruvate phosphotransferase system regulates detection and processing of the quorum sensing signal autoinducer-2.
Mol Microbiol. 2012 Apr;84(1):93-104. doi: 10.1111/j.1365-2958.2012.08010.x. Epub 2012 Mar 5.
10
LsrR quorum sensing "switch" is revealed by a bottom-up approach.
PLoS Comput Biol. 2011 Sep;7(9):e1002172. doi: 10.1371/journal.pcbi.1002172. Epub 2011 Sep 29.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验