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语义注释元数据:连接Samply.MDR与MDM门户

Semantically Annotated Metadata: Interconnecting Samply.MDR and MDM-Portal.

作者信息

Vengadeswaran Abishaa, Neuhaus Philipp, Hegselmann Stefan, Storf Holger, Kadioglu Dennis

机构信息

Medical Informatics Group, University Hospital Frankfurt, Frankfurt am Main, Germany.

Institute of Medical Informatics, University of Münster, Münster, Germany.

出版信息

Stud Health Technol Inform. 2019 Sep 3;267:86-92. doi: 10.3233/SHTI190810.

Abstract

Interoperability is a growing demand in healthcare, caused by heterogeneous sources, which aggravate information transfer. The interoperability issues can be addressed by metadata repositories. These support to ensure syntactical interoperability, like compatible data formats or value ranges, however especially semantic interoperability is still challenging. Semantic annotation through standardized terminologies and classifications enables to foster semantic interoperability. This work aims to interconnect Samply.MDR and Portal of Medical Data Model (MDM-Portal) to allow facilitated semantic annotation with UMLS. Therefore, Samply.MDR was extended to store semantic information. While creating a data element, a request to MDM is send, which results in possible UMLS codes. The user can now adopt the most suitable code and select a link type between the code and the element itself. A successful enrichment of data elements with UMLS codes was shown by interconnecting Samply.MDR and MDM-Portal.

摘要

互操作性在医疗保健领域的需求日益增长,这是由异构源导致的,而异构源加剧了信息传递问题。元数据存储库可以解决互操作性问题。这些存储库有助于确保句法互操作性,如兼容的数据格式或值域,然而,特别是语义互操作性仍然具有挑战性。通过标准化术语和分类进行语义标注有助于促进语义互操作性。这项工作旨在将Samply.MDR与医学数据模型门户(MDM-Portal)互连,以便使用统一医学语言系统(UMLS)进行便捷的语义标注。因此,对Samply.MDR进行了扩展以存储语义信息。在创建数据元素时,会向MDM发送请求,这会产生可能的UMLS代码。用户现在可以采用最合适的代码,并选择代码与元素本身之间的链接类型。通过将Samply.MDR和MDM-Portal互连,展示了用UMLS代码成功丰富数据元素的过程。

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