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溶剂暴露半胱氨酸在红假单胞菌的金属伴侣蛋白 CooT 中形成一个特殊的镍结合位点。

A Solvent-Exposed Cysteine Forms a Peculiar Ni -Binding Site in the Metallochaperone CooT from Rhodospirillum rubrum.

机构信息

IRIG, CBM, University of Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France.

Laboratory of Bioinorganic Chemistry, Department of Pharmacy and Biotechnology, University of Bologna, Via Giuseppe Fanin 40, 40127, Bologna, Italy.

出版信息

Chemistry. 2019 Dec 2;25(67):15351-15360. doi: 10.1002/chem.201903492. Epub 2019 Nov 6.

Abstract

In Rhodospirillum rubrum, the maturation of carbon monoxide dehydrogenase (CODH) requires three nickel chaperones, namely RrCooC, RrCooT and RrCooJ. Recently, the biophysical characterisation of the RrCooT homodimer and the X-ray structure of its apo form revealed the existence of a solvent-exposed Ni -binding site at the dimer interface, involving the strictly conserved Cys2. Here, a multifaceted approach that used NMR and X-ray absorption spectroscopies, complemented with structural bio-modelling methodologies, was used to characterise the binding mode of Ni in RrCooT. This study suggests that Ni adopts a square-planar geometry through a N S coordinating environment that comprises the two thiolate and amidate groups of both Cys2 residues at the dimer interface. The existence of a diamagnetic mononuclear Ni centre with bis-amidate/bis-thiolate ligands, coordinated by a single-cysteine motif, is unprecedented in biology and raises the question of its role in the activation of CODH at the molecular level.

摘要

在红假单胞菌中,一氧化碳脱氢酶(CODH)的成熟需要三种镍伴侣,即 RrCooC、RrCooT 和 RrCooJ。最近,RrCooT 同源二聚体的生物物理特性和其无配体形式的 X 射线结构揭示了在二聚体界面处存在一个溶剂暴露的 Ni 结合位点,涉及严格保守的 Cys2。在这里,使用 NMR 和 X 射线吸收光谱学以及结构生物建模方法的多方面方法,用于表征 RrCooT 中 Ni 的结合模式。这项研究表明,Ni 通过 N S 配位环境采用平面正方形几何形状,该环境包含二聚体界面处两个 Cys2 残基的两个硫醇盐和酰胺基。具有双酰胺/双硫醇配体的顺磁单核 Ni 中心,由单个半胱氨酸基序配位,在生物学中是前所未有的,这引发了关于其在 CODH 分子水平激活中的作用的问题。

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