文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

High-Plex Spatially Resolved RNA and Protein Detection Using Digital Spatial Profiling: A Technology Designed for Immuno-oncology Biomarker Discovery and Translational Research.

作者信息

Beechem Joseph M

机构信息

NanoString Technologies Inc., Seattle, WA, USA.

出版信息

Methods Mol Biol. 2020;2055:563-583. doi: 10.1007/978-1-4939-9773-2_25.


DOI:10.1007/978-1-4939-9773-2_25
PMID:31502169
Abstract

Digital spatial profiling (DSP) is a nondestructive method for high-plex spatial profiling of proteins and RNA from a wide variety of sample types, including formalin-fixed, paraffin-embedded (FFPE) tissue sections. This method uses small photocleavable oligonucleotide "barcodes" (PC-oligos) covalently attached to in-situ affinity reagents (antibodies and RNA-probes) to provide unlimited multiplexing capability. The photocleavage light is projected onto the tissue slice using two-digital micromirror devices (DMD), containing one-million semiconductor-based micromirrors allowing complete flexibility in the pattern of light utilized for high-plex digital profiling of the tissue. These spatial light-patterns can be automatically configured to profile (1) "tumor-only" cells plus "tumor-microenvironment-only" cells; (2) unique cell types and rare cell features (e.g., macrophages, CD8, CD3, CD45, PD-L1 on macrophages, PD-L1 on tumors, etc.); (3) spatial gradients around cell-features or tumor features (e.g., excluded boundaries); (4) hypothesis-free spatial grids; (5) simple hand-selected geometric areas (e.g., free-hand software-based "drawing" on tissue regions); and (6) or any combination of the above modalities. These DMDs can automatically configure themselves to "align" to the biology presented by each individual tissue section. Advanced validated high-plex panels of proteins (~100-plex) and RNA (up to 20,000-plex) specifically designed for immuno-oncology (IO) have been developed. Immuno-oncology clinical trial samples examined using DSP have already provided key insights into the mechanism of action of combination therapy in melanoma, appearing recently in back-to-back articles published in Nature Medicine. DSP has been developed with knowledge of key immuno-oncology terms (tumor, tumor microenvironment, stroma, etc.) and prevalidated high-plex panels of affinity markers (antibodies and in situ RNA probes) and has the potential to bring the full power of high-plex molecular profiling to spatially resolved studies.

摘要

相似文献

[1]
High-Plex Spatially Resolved RNA and Protein Detection Using Digital Spatial Profiling: A Technology Designed for Immuno-oncology Biomarker Discovery and Translational Research.

Methods Mol Biol. 2020

[2]
Multiplex digital spatial profiling of proteins and RNA in fixed tissue.

Nat Biotechnol. 2020-5-11

[3]
GeoMx™ RNA Assay: High Multiplex, Digital, Spatial Analysis of RNA in FFPE Tissue.

Methods Mol Biol. 2020

[4]
High-Plex Predictive Marker Discovery for Melanoma Immunotherapy-Treated Patients Using Digital Spatial Profiling.

Clin Cancer Res. 2019-6-12

[5]
Immuno-profiling and cellular spatial analysis using five immune oncology multiplex immunofluorescence panels for paraffin tumor tissue.

Sci Rep. 2021-4-19

[6]
High-Plex Spatial Profiling of RNA and Protein Using Digital Spatial Profiler.

Methods Mol Biol. 2023

[7]
Spatial transcriptomics and proteomics technologies for deconvoluting the tumor microenvironment.

Biotechnol J. 2021-9

[8]
Challenges and Opportunities for Immunoprofiling Using a Spatial High-Plex Technology: The NanoString GeoMx Digital Spatial Profiler.

Front Oncol. 2022-6-29

[9]
The InSituPlex Staining Method for Multiplexed Immunofluorescence Cell Phenotyping and Spatial Profiling of Tumor FFPE Samples.

Methods Mol Biol. 2020

[10]
Region of interest localization, tissue storage time, and antibody binding density-a technical note on the GeoMx® Digital Spatial Profiler.

Immunooncol Technol. 2024-8-20

引用本文的文献

[1]
Spatial Omics Profiling of Treatment-Naïve Lung Adenocarcinoma with Brain Metastasis as the Initial Presentation.

Cancers (Basel). 2025-7-31

[2]
The spatial landscape of glial pathology and T cell response in Parkinson's disease substantia nigra.

Nat Commun. 2025-8-4

[3]
Investigative needle core biopsies support multimodal deep-data generation in glioblastoma.

Nat Commun. 2025-4-28

[4]
A window of opportunity trial evaluating intratumoral injection of Copaxone® in patients with percutaneously accessible tumors.

Transl Med Commun. 2023

[5]
Mesenchymal Stem Cells and Fibroblasts Contribute to Microvascular Proliferation in Glioblastoma and are Correlated with Immunosuppression and Poor Outcome.

Cancer Immunol Res. 2025-6-4

[6]
B cells and energy metabolism in HER2-positive DCIS: insights into breast cancer progression from spatial-omics analyses.

Breast Cancer Res. 2025-3-21

[7]
Spatially Resolved, Multiregion Proteomics for Prediction of Immunotherapy Outcome in Deficient Mismatch Repair Metastatic Colorectal Cancer.

Clin Cancer Res. 2025-5-1

[8]
Skin autonomous antibody production regulates host-microbiota interactions.

Nature. 2025-2

[9]
Spatial-transcriptomic profiling: a new lens for understanding myelofibrosis pathophysiology.

Cell Commun Signal. 2024-10-21

[10]
Glioblastoma cells increase expression of notch signaling and synaptic genes within infiltrated brain tissue.

Nat Commun. 2024-9-9

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索