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The role of citizen science in addressing grand challenges in food and agriculture research.公民科学在解决粮食和农业研究重大挑战中的作用。
Proc Biol Sci. 2018 Nov 21;285(1891):20181977. doi: 10.1098/rspb.2018.1977.
2
ABC random forests for Bayesian parameter inference.ABC 随机森林用于贝叶斯参数推断。
Bioinformatics. 2019 May 15;35(10):1720-1728. doi: 10.1093/bioinformatics/bty867.
3
Rapid Divergence of Wing Volatile Profiles Between Subspecies of the Butterfly Pieris rapae (Lepidoptera: Pieridae).菜粉蝶(鳞翅目:粉蝶科)不同亚种间翅挥发性物质谱的快速分化
J Insect Sci. 2018 Mar 1;18(2). doi: 10.1093/jisesa/iey026.
4
Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling.利用基因组学、博物馆馆藏和模拟建模揭示气候介导的杂种区移动。
Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2284-E2291. doi: 10.1073/pnas.1714950115. Epub 2018 Feb 20.
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Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient.与气候梯度相关的蝴蝶杂交带在地理和基因组景观上的分化模式。
Mol Ecol. 2017 Sep;26(18):4725-4742. doi: 10.1111/mec.14236. Epub 2017 Aug 21.
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ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.估计用于群体结构分析的F统计量
Evolution. 1984 Nov;38(6):1358-1370. doi: 10.1111/j.1558-5646.1984.tb05657.x.
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Genomic inferences of domestication events are corroborated by written records in Brassica rapa.白菜的书面记录证实了驯化事件的基因组推断。
Mol Ecol. 2017 Jul;26(13):3373-3388. doi: 10.1111/mec.14131. Epub 2017 May 5.
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No saturation in the accumulation of alien species worldwide.全球外来物种积累中不存在饱和现象。
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Complete genome of , a resilient alien, a cabbage pest, and a source of anti-cancer proteins.[某种生物]的完整基因组,一种顽强的外来物种、甘蓝害虫以及抗癌蛋白的来源。 (注:原文中“a resilient alien, a cabbage pest, and a source of anti-cancer proteins”前缺少具体所指生物名称,翻译时用“[某种生物]”表示)
F1000Res. 2016 Nov 3;5:2631. doi: 10.12688/f1000research.9765.1. eCollection 2016.
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vcfr: a package to manipulate and visualize variant call format data in R.vcfr:一个用于在R中处理和可视化变异调用格式数据的软件包。
Mol Ecol Resour. 2017 Jan;17(1):44-53. doi: 10.1111/1755-0998.12549. Epub 2016 Jul 12.

基因组学和公民科学揭示农业害虫蝴蝶的全球入侵历史。

Global invasion history of the agricultural pest butterfly revealed with genomics and citizen science.

机构信息

Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN 37996;

Ecological and Biological Sciences Practice, Exponent, Inc., Menlo Park, CA 94025.

出版信息

Proc Natl Acad Sci U S A. 2019 Oct 1;116(40):20015-20024. doi: 10.1073/pnas.1907492116. Epub 2019 Sep 10.

DOI:10.1073/pnas.1907492116
PMID:31506352
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6778179/
Abstract

The small cabbage white butterfly, , is a major agricultural pest of cruciferous crops and has been introduced to every continent except South America and Antarctica as a result of human activities. In an effort to reconstruct the near-global invasion history of , we developed a citizen science project, the "Pieris Project," and successfully amassed thousands of specimens from 32 countries worldwide. We then generated and analyzed nuclear (double-digest restriction site-associated DNA fragment procedure [ddRAD]) and mitochondrial DNA sequence data for these samples to reconstruct and compare different global invasion history scenarios. Our results bolster historical accounts of the global spread and timing of introductions. We provide molecular evidence supporting the hypothesis that the ongoing divergence of the European and Asian subspecies of (∼1,200 y B.P.) coincides with the diversification of brassicaceous crops and the development of human trade routes such as the Silk Route (Silk Road). The further spread of over the last ∼160 y was facilitated by human movement and trade, resulting in an almost linear series of at least 4 founding events, with each introduced population going through a severe bottleneck and serving as the source for the next introduction. Management efforts of this agricultural pest may need to consider the current existence of multiple genetically distinct populations. Finally, the international success of the Pieris Project demonstrates the power of the public to aid scientists in collections-based research addressing important questions in invasion biology, and in ecology and evolutionary biology more broadly.

摘要

小菜粉蝶,是十字花科作物的主要农业害虫,由于人类活动的结果,已经引入除南美洲和南极洲以外的所有大陆。为了重建小菜粉蝶的近全球入侵历史,我们开展了一个公民科学项目,即“粉蝶计划”,并成功从全球 32 个国家收集了数千个标本。然后,我们对这些样本的核(双酶切限制位点相关 DNA 片段分析程序[ddRAD])和线粒体 DNA 序列数据进行了生成和分析,以重建和比较不同的全球入侵历史情景。我们的结果支持了小菜粉蝶全球传播和引入时间的历史记录。我们提供了分子证据,支持这样一种假说,即欧洲和亚洲亚种小菜粉蝶的持续分化(约 1200 年前)与十字花科作物的多样化以及人类贸易路线(如丝绸之路)的发展相吻合。在过去的约 160 年里,小菜粉蝶的进一步传播是由人类的迁徙和贸易所促成的,导致了至少 4 次创始事件的几乎线性系列,每次引入的种群都经历了严重的瓶颈,成为下一次引入的来源。对这种农业害虫的管理工作可能需要考虑当前存在的多个遗传上不同的种群。最后,粉蝶计划在国际上的成功证明了公众在基于收集的研究中协助科学家解决入侵生物学、生态学和进化生物学等更广泛领域的重要问题的力量。