Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Graduate Group in Genomics and Computational Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Cell Rep. 2019 Sep 10;28(11):2795-2806.e3. doi: 10.1016/j.celrep.2019.08.022.
The 3' UTR (UTR) of human mRNAs plays a critical role in controlling protein expression and function. Importantly, 3' UTRs of human messages are not invariant for each gene but rather are shaped by alternative polyadenylation (APA) in a cell state-dependent manner, including in response to T cell activation. However, the proteins and mechanisms driving APA regulation remain poorly understood. Here we show that the RNA-binding protein CELF2 controls APA of its own message in a signal-dependent manner by competing with core enhancers of the polyadenylation machinery for binding to RNA. We further show that CELF2 binding overlaps with APA enhancers transcriptome-wide, and almost half of 3' UTRs that undergo T cell signaling-induced APA are regulated in a CELF2-dependent manner. These studies thus reveal CELF2 to be a critical regulator of 3' UTR identity in T cells and demonstrate an additional mechanism for CELF2 in regulating polyadenylation site choice.
人类 mRNA 的 3'UTR(UTR)在控制蛋白质表达和功能方面起着关键作用。重要的是,人类消息的 3'UTR 不是针对每个基因不变的,而是通过细胞状态依赖的方式(包括对 T 细胞激活的反应)由可变多聚腺苷酸化(APA)塑造的。然而,驱动 APA 调节的蛋白质和机制仍知之甚少。在这里,我们表明 RNA 结合蛋白 CELF2 通过与多聚腺苷酸化机器的核心增强子竞争结合 RNA,以信号依赖的方式控制其自身消息的 APA。我们进一步表明,CELF2 结合在全转录组范围内与 APA 增强子重叠,并且在经历 T 细胞信号诱导 APA 的近一半 3'UTR 是受 CELF2 依赖性调节的。因此,这些研究表明 CELF2 是 T 细胞中 3'UTR 身份的关键调节剂,并证明了 CELF2 在调节多聚腺苷酸化位点选择方面的另一种机制。