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使用中红外光谱和监督式机器学习预测蚊虫种类及种群年龄结构

Prediction of mosquito species and population age structure using mid-infrared spectroscopy and supervised machine learning.

作者信息

González Jiménez Mario, Babayan Simon A, Khazaeli Pegah, Doyle Margaret, Walton Finlay, Reedy Elliott, Glew Thomas, Viana Mafalda, Ranford-Cartwright Lisa, Niang Abdoulaye, Siria Doreen J, Okumu Fredros O, Diabaté Abdoulaye, Ferguson Heather M, Baldini Francesco, Wynne Klaas

机构信息

School of Chemistry, University of Glasgow, Glasgow, G12 8QQ, UK.

Institute of Biodiversity Animal Health and Comparative Medicine, University of Glasgow, Glasgow, G12 8QQ, UK.

出版信息

Wellcome Open Res. 2019 Aug 7;4:76. doi: 10.12688/wellcomeopenres.15201.2. eCollection 2019.

Abstract

Despite the global efforts made in the fight against malaria, the disease is resurging. One of the main causes is the resistance that mosquitoes, vectors of the disease, have developed to insecticides. must survive for at least 10 days to possibly transmit malaria. Therefore, to evaluate and improve malaria vector control interventions, it is imperative to monitor and accurately estimate the age distribution of mosquito populations as well as their population sizes. Here, we demonstrate a machine-learning based approach that uses mid-infrared spectra of mosquitoes to characterise simultaneously both age and species identity of females of the African malaria vector species and , using laboratory colonies. Mid-infrared spectroscopy-based prediction of mosquito age structures was statistically indistinguishable from true modelled distributions. The accuracy of classifying mosquitoes by species was 82.6%. The method has a negligible cost per mosquito, does not require highly trained personnel, is rapid, and so can be easily applied in both laboratory and field settings. Our results indicate this method is a promising alternative to current mosquito species and age-grading approaches, with further improvements to accuracy and expansion for use with wild mosquito vectors possible through collection of larger mid-infrared spectroscopy data sets.

摘要

尽管全球在抗击疟疾方面做出了努力,但该疾病仍在卷土重来。主要原因之一是作为该疾病传播媒介的蚊子对杀虫剂产生了抗药性。蚊子必须存活至少10天才有可能传播疟疾。因此,为了评估和改进疟疾媒介控制干预措施,监测并准确估计蚊子种群的年龄分布及其种群规模势在必行。在此,我们展示了一种基于机器学习的方法,该方法利用蚊子的中红外光谱,通过实验室菌落同时表征非洲疟疾媒介物种冈比亚按蚊和阿拉伯按蚊雌蚊的年龄和物种身份。基于中红外光谱的蚊子年龄结构预测在统计学上与真实建模分布无差异。按物种对蚊子进行分类的准确率为82.6%。该方法每只蚊子的成本可忽略不计,不需要训练有素的人员,速度快,因此可以很容易地应用于实验室和野外环境。我们的结果表明,该方法是当前蚊子物种和年龄分级方法的一个有前景的替代方案,通过收集更大的中红外光谱数据集,有可能进一步提高准确性并扩展用于野生蚊子媒介。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3371/6799939/6f3821e07c9b/wellcomeopenres-4-16923-g0000.jpg

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