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基于iTRAQ液相色谱-串联质谱蛋白质组学的增殖性糖尿病视网膜病变治疗靶点新探索

[New exploration of treatment target for proliferative diabetic retinopathy based on iTRAQ LC-MS/MS Proteomics].

作者信息

Wen D J, Ren X J, Dong L J, He Y, Li X R

机构信息

Tianjin Medical University Eye Hospital, Eye Institute and School of Optometry, Tianjin Medical University Eye Hospital, Tianjin Key Laboratory of Retinal Functions and Diseases, Tianjin 300384, China.

出版信息

Zhonghua Yan Ke Za Zhi. 2019 Oct 11;55(10):769-776. doi: 10.3760/cma.j.issn.0412-4081.2019.10.008.

DOI:10.3760/cma.j.issn.0412-4081.2019.10.008
PMID:31607066
Abstract

To identify differentially expressed proteins between the patients with proliferative diabetic retinopathy (PDR) and vitreous floaters, and explore treatment target for PDR based on isobaric tags for relative and absolute quantification (iTRAQ) LC-MS/MS Proteomics. Vitreous samples were collected from 28 eyes of patients with PDR and 4 eyes with vitreous floaters, which served as controls. For quantitative proteomics, vitreous samples were combined and proteins extracted and labeled with iTRAQ peptide-tagging reagents. Samples were fractionated by liquid chromatography (LC), analyzed by tandem mass spectrometry (MS/MS) and Gene Ontology (GO) analyses performed on differentially expressed proteins identified in the PDR samples. In the PDR vitreous, 26 proteins were identified that were differentially expressed when compared to the controls. Of these, 7 showed a significant increase (0.05) and 19 a significant decrease (0.05)in expression in PDR patients. These included some high abundance proteins including Retinoic acid receptor reactive protein 2 (PDR 1=85.0, PDR 2=83.0, Control 1=119.6, Control 2=120.2, FC=0.710, 0.001), Semaphorin-4B(PDR 1=64.4, PDR 2=68.8, Control 1=135.4, Control 2=146.0, FC=0.473, 0.023), Apolipoprotein B (PDR 1=104.4, PDR 2=106.6, Control 1=89.0, Control 2=85.3, FC=1.211, 0.024), and Heat shock protein 70 (PDR 1=69.3, PDR 2=75.0, Control 1=137.7, Control 2=138.3, FC=0.523, 0.026), which are closely related to the pathological mechanism of PDR. GO analysis clustered the differentially expressed genes into three major functional domains: Biological Processes, Molecular Function and Cellular Component. Differential gene expression was found in the categories of cellular metabolism, organonitrogen compound and carbohydrate derivative metabolic processes, transferase activity and transmembrane signaling receptor activity. KEGG Pathway analysis indicate that Chemerin signaling through Akt, Sema4B signaling via PI3K, and HIF-1α signal pathways were all altered in the PDR samples. In this study we identified variations in expression of genes extensively involved in key biological processes in the retina including neovascularization, cellular metabolism and transmembrane signaling, which provide new insights into the pathophysiology of PDR. Extracellular matrix was degraded and endothelial cell migration was induced by Chemerin, in addition, the destruction of blood-retinal barrier and neuronal apoptosis were induced by ApoB. Chemerin and ApoB accelerated the development of PDR. Sema 4B participated in vascular protection, HSP70 conducted anti-apoptosis. These two cytokines protected the retinal neurovascular in PDR patients. Therefore, Chemerin, Sema 4B, ApoB and HSP70 may be the treatment target for PDR. .

摘要

为了鉴定增殖性糖尿病视网膜病变(PDR)患者与玻璃体混浊患者之间差异表达的蛋白质,并基于相对和绝对定量等压标签(iTRAQ)液相色谱-串联质谱(LC-MS/MS)蛋白质组学探索PDR的治疗靶点。收集28例PDR患者的眼玻璃体样本和4例玻璃体混浊患者的眼玻璃体样本作为对照。对于定量蛋白质组学,将玻璃体样本合并,提取蛋白质并用iTRAQ肽标记试剂进行标记。样本通过液相色谱(LC)进行分离,通过串联质谱(MS/MS)进行分析,并对PDR样本中鉴定出的差异表达蛋白质进行基因本体论(GO)分析。在PDR玻璃体中,鉴定出26种与对照相比差异表达的蛋白质。其中,7种在PDR患者中的表达显著增加(P<0.05),19种显著降低(P<0.05)。这些蛋白质包括一些高丰度蛋白质,如视黄酸受体反应蛋白2(PDR 1=85.0,PDR 2=83.0,对照1=119.6,对照2=120.2,FC=0.710,P<0.001)、信号素4B(PDR 1=64.4,PDR 2=68.8,对照1=135.4,对照2=146.0,FC=0.473,P=0.023)、载脂蛋白B(PDR 1=104.4,PDR 2=106.6,对照1=89.0,对照2=85.3,FC=1.211,P=0.024)和热休克蛋白70(PDR 1=69.3,PDR 2=75.0,对照1=137.7,对照2=138.3,FC=0.523,P=0.026),它们与PDR的病理机制密切相关。GO分析将差异表达基因聚类到三个主要功能域:生物过程、分子功能和细胞成分。在细胞代谢、有机氮化合物和碳水化合物衍生物代谢过程、转移酶活性和跨膜信号受体活性等类别中发现了差异基因表达。KEGG通路分析表明,PDR样本中通过Akt的Chemerin信号通路、通过PI3K的Sema4B信号通路和HIF-1α信号通路均发生了改变。在本研究中,我们鉴定出参与视网膜关键生物过程(包括新生血管形成、细胞代谢和跨膜信号传导)的基因表达存在差异,这为PDR的病理生理学提供了新的见解。Chemerin可降解细胞外基质并诱导内皮细胞迁移,此外,ApoB可诱导血视网膜屏障破坏和神经元凋亡。Chemerin和ApoB加速了PDR的发展。Sema 4B参与血管保护,HSP70具有抗凋亡作用。这两种细胞因子保护PDR患者的视网膜神经血管。因此,Chemerin、Sema 4B、ApoB和HSP70可能是PDR的治疗靶点。

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