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环状 RNA 和 microRNA 在瘢痕疙瘩形成中的整合调控网络。

The integrative regulatory network of circRNA and microRNA in keloid scarring.

机构信息

Technology Transfer Center, Kunming Medical University, 1168 West Chunrong Road, Yuhua Avenue, Chenggong District, Kunming, 650500, Yunnan, China.

Department of Physiology, Kunming Medical University, Kunming, China.

出版信息

Mol Biol Rep. 2020 Jan;47(1):201-209. doi: 10.1007/s11033-019-05120-y. Epub 2019 Oct 14.


DOI:10.1007/s11033-019-05120-y
PMID:31612410
Abstract

Circular RNA (circRNA), a novel type of non-coding RNA that consists of a circular loop, has been demonstrated to act as a "sponge" for microRNAs (miRNAs). However, the role of circRNAs in keloid remains unknown. In this study, we investigated circRNA expression profiles in keloid to identify potential diagnostic and therapeutic circRNAs. We performed a circRNA microarray assay to determine circRNA expression in keloid and paired normal skin tissues. Quantitative reverse transcription polymerase chain reaction was used to evaluate the expression levels of candidate circRNAs. The most significantly over-expressed circRNA was used to predict putative miRNA targets and the binding sites of miRNAs with this circRNA. Finally, we constructed a circRNA-miRNA interaction network and carried out gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses. We found 52 significantly upregulated and 24 downregulated circRNAs in keloid compared with normal skin tissue. We confirmed that hsa_circ_0057452, hsa_circ_0007482, hsa_circ_0020792, hsa_circ_0057342, and hsa_circ_0043688 were significantly upregulated in keloid tissues. Analysis of the circRNA-miRNA interaction network revealed that circRNAs could interact with miRNAs, including miRNA-29a, miRNA-23a-5p and miRNA-1976. GO and KEGG analyses indicated that these target genes were involved in biological functions and signaling pathways that may play vital roles in the pathogenesis of keloid. This study revealed that circRNAs are potentially implicated in the development of keloid and could serve as novel diagnostic and therapeutic targets.

摘要

环状 RNA(circRNA)是一种新型的非编码 RNA,由环形环组成,已被证明可以作为 microRNAs(miRNAs)的“海绵”。然而,circRNA 在瘢痕疙瘩中的作用尚不清楚。在这项研究中,我们研究了瘢痕疙瘩中的 circRNA 表达谱,以鉴定潜在的诊断和治疗用 circRNA。我们进行了 circRNA 微阵列分析,以确定瘢痕疙瘩和配对正常皮肤组织中的 circRNA 表达。定量逆转录聚合酶链反应用于评估候选 circRNA 的表达水平。使用最显著过表达的 circRNA 来预测潜在的 miRNA 靶标以及该 miRNA 与该 circRNA 的结合位点。最后,我们构建了 circRNA-miRNA 相互作用网络,并进行了基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路分析。与正常皮肤组织相比,我们发现瘢痕疙瘩中有 52 个明显上调和 24 个下调的 circRNA。我们证实 hsa_circ_0057452、hsa_circ_0007482、hsa_circ_0020792、hsa_circ_0057342 和 hsa_circ_0043688 在瘢痕疙瘩组织中明显上调。circRNA-miRNA 相互作用网络的分析表明,circRNA 可以与 miRNA 相互作用,包括 miRNA-29a、miRNA-23a-5p 和 miRNA-1976。GO 和 KEGG 分析表明,这些靶基因参与了可能在瘢痕疙瘩发病机制中起重要作用的生物学功能和信号通路。这项研究表明,circRNA 可能与瘢痕疙瘩的发展有关,并可能成为新的诊断和治疗靶标。

相似文献

[1]
The integrative regulatory network of circRNA and microRNA in keloid scarring.

Mol Biol Rep. 2019-10-14

[2]
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[3]
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[4]
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[5]
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[6]
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[7]
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[8]
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[9]
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引用本文的文献

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Mol Biol Rep. 2024-10-18

[2]
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Nanomedicine (Lond). 2024

[3]
Role of hsa_circ_0007482 in pterygium development: insights into proliferation, apoptosis, and clinical correlations.

Int J Ophthalmol. 2024-8-18

[4]
Gene Profiling of Circular RNAs in Keloid-prone Individuals and ceRNA Network Construction During Wound Healing.

Aesthetic Plast Surg. 2024-11

[5]
Hsa_circ_0007482 Promotes Proliferation and Differentiation of Chondrocytes in Knee Osteoarthritis.

Cartilage. 2024-5-15

[6]
Nanocarrier-Mediated Delivery of MicroRNAs for Fibrotic Diseases.

Mol Diagn Ther. 2024-1

[7]
Decoding the molecular landscape of keloids: new insights from single-cell transcriptomics.

Burns Trauma. 2023-6-6

[8]
Role and mechanism of Circ-PDE7B in the formation of keloid.

Int Wound J. 2023-11

[9]
Mechanisms underlying pathological scarring by fibroblasts during wound healing.

Int Wound J. 2023-8

[10]
Keloid Patient Plasma-Derived Exosomal hsa_circ_0020792 Promotes Normal Skin Fibroblasts Proliferation, Migration, and Fibrogenesis via Modulating miR-193a-5p and Activating TGF-β1/Smad2/3 Signaling.

Drug Des Devel Ther. 2022

本文引用的文献

[1]
Altered expression of circular RNA in primary Sjögren's syndrome.

Clin Rheumatol. 2019-8-16

[2]
Circbank: a comprehensive database for circRNA with standard nomenclature.

RNA Biol. 2019-4-25

[3]
Identification and integrated analysis of microRNA expression profiles in keloid.

J Cosmet Dermatol. 2018-10

[4]
miRNA-23a/27a attenuates muscle atrophy and renal fibrosis through muscle-kidney crosstalk.

J Cachexia Sarcopenia Muscle. 2018-3-26

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Nucleic Acids Res. 2018-1-4

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Downregulation of microRNA-31 inhibits proliferation and induces apoptosis by targeting in human keloid.

Oncotarget. 2017-8-16

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Microarray profiling of circular RNAs and the potential regulatory role of hsa_circ_0071410 in the activated human hepatic stellate cell induced by irradiation.

Gene. 2017-9-20

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Circular RNA - New member of noncoding RNA with novel functions.

Exp Biol Med (Maywood). 2017-6

[9]
A novel identified circular RNA, circRNA_010567, promotes myocardial fibrosis via suppressing miR-141 by targeting TGF-β1.

Biochem Biophys Res Commun. 2017-6-10

[10]
Circular RNA profiling reveals that circCOL3A1-859267 regulate type I collagen expression in photoaged human dermal fibroblasts.

Biochem Biophys Res Commun. 2017-4-29

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