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从海洋海绵来源菌株sp. SM14中筛选并异源表达具有聚己内酯(PCL)降解活性的聚对苯二甲酸乙二酯水解酶(PETase)样酶(SM14est)

Screening and Heterologous Expression of a Polyethylene Terephthalate Hydrolase (PETase)-Like Enzyme (SM14est) With Polycaprolactone (PCL)-Degrading Activity, From the Marine Sponge-Derived Strain sp. SM14.

作者信息

Almeida Eduardo L, Carrillo Rincón Andrés Felipe, Jackson Stephen A, Dobson Alan D W

机构信息

School of Microbiology, University College Cork, Cork, Ireland.

Environmental Research Institute, University College Cork, Cork, Ireland.

出版信息

Front Microbiol. 2019 Oct 1;10:2187. doi: 10.3389/fmicb.2019.02187. eCollection 2019.

Abstract

Plastics, such as the polyethylene terephthalate (PET), are widely used for various industrial applications, due to their physicochemical properties which are particularly useful in the packaging industry. However, due to improper plastic waste management and difficulties in recycling, post-consumer plastic waste has become a pressing issue for both the environment and for human health. Hence, novel technologies and methods of processing plastic waste are required to address these issues. Enzymatic-assisted hydrolysis of synthetic polymers has been proposed as a potentially more efficient and environment-friendly alternative to the currently employed methods. Recently, a number of PET hydrolases have been described, and in particular a PETase derived from 201-F6 (IsPETase), which appears to be the most efficient and substrate-specific bacterial PET hydrolase enzyme discovered to date. In order to further investigate this class of PETase-like enzymes, we employed an based screening approach on the biotechnologically relevant genus , including terrestrial and marine isolates; in a search for potential PETase homologs. From a total of 52 genomes analyzed, we were able to identify three potential PETase-like enzymes, all of which were derived from marine-sponge associated isolates. A candidate PETase-like gene (SM14est) was identified in sp. SM14. Further characterization of the SM14est protein sequence and its predicted three-dimensional structure were performed and compared to the well-characterized IsPETase. Both the serine hydrolase motif Gly-x1-Ser-x2-Gly and the catalytic triad Ser, Asp, His are conserved in both sequences. Molecular docking experiments indicated that the SM14est enzyme possessed the capacity to bind plastics as substrates. Finally, polyesterase activity was confirmed using a polycaprolactone (PCL) plate clearing assay which is a model substrate for the degradation of plastics; following heterologous expression of SM14est in , with secretion being facilitated by the native signal peptide. These findings provide further insights into this important class of PETase-like enzymes.

摘要

塑料,如聚对苯二甲酸乙二酯(PET),因其物理化学性质在包装行业特别有用,而被广泛用于各种工业应用。然而,由于塑料废物管理不当以及回收困难,消费后塑料废物已成为环境和人类健康的紧迫问题。因此,需要新的技术和方法来处理塑料废物以解决这些问题。合成聚合物的酶促水解已被提议作为一种比目前使用的方法更有效且更环保的替代方法。最近,已经描述了许多PET水解酶,特别是源自201-F6的PET酶(IsPETase),它似乎是迄今为止发现的最有效且底物特异性最强的细菌PET水解酶。为了进一步研究这类PET酶样酶,我们对包括陆地和海洋分离株在内的与生物技术相关的属采用了基于筛选的方法,以寻找潜在的PET酶同源物。在总共分析的52个基因组中,我们能够鉴定出三种潜在的PET酶样酶,它们均源自与海绵相关的海洋分离株。在海绵属SM14中鉴定出一个候选PET酶样基因(SM14est)。对SM14est蛋白序列及其预测的三维结构进行了进一步表征,并与特征明确的IsPETase进行了比较。丝氨酸水解酶基序Gly-x1-Ser-x2-Gly和催化三联体Ser、Asp、His在两个序列中均保守。分子对接实验表明,SM14est酶具有结合塑料作为底物的能力。最后,使用聚己内酯(PCL)平板清除试验确认了聚酯酶活性,该试验是塑料降解的模型底物;在SM14est在大肠杆菌中异源表达后,由天然信号肽促进分泌。这些发现为这类重要的值PET酶样酶提供了进一步的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0716/6779837/ba1372ab52c2/fmicb-10-02187-g001.jpg

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