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[工业酶研究中的计算化学方法]

[Computational chemistry approaches in studies on industrial enzymes].

作者信息

Liu Haiyan

机构信息

School of Life Sciences, University of Science and Technology of China, Hefei 230026, Anhui, China.

出版信息

Sheng Wu Gong Cheng Xue Bao. 2019 Oct 25;35(10):1819-1828. doi: 10.13345/j.cjb.190293.

Abstract

We review major computational chemistry techniques applied in industrial enzyme studies, especially approaches intended for guiding enzyme engineering. These include molecular mechanics force field and molecular dynamics simulation, quantum mechanical and combined quantum mechanical/molecular mechanical approaches, electrostatic continuum models, molecular docking, etc. These approaches are essentially introduced from the following two angles for viewing: one is about the methods themselves, including the basic concepts, the primary computational results, and potential advantages and limitations; the other is about obtaining valuable information from the respective calculations to guide the design of mutants and mutant libraries.

摘要

我们回顾了应用于工业酶研究的主要计算化学技术,特别是旨在指导酶工程的方法。这些技术包括分子力学力场和分子动力学模拟、量子力学以及量子力学/分子力学相结合的方法、静电连续介质模型、分子对接等。这些方法主要从以下两个角度进行介绍:一是关于方法本身,包括基本概念、主要计算结果以及潜在的优点和局限性;另一个是关于从各自的计算中获取有价值的信息,以指导突变体和突变体文库的设计。

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