Suppr超能文献

从爱尔兰土壤中分离出的两株酵母Kazachstania servazzii的基因组序列草图

Draft Genome Sequences of Two Isolates of the Yeast Kazachstania servazzii Recovered from Soil in Ireland.

作者信息

Faherty Lynne, Lewis Clifton, McElheron Matt, Garvey Niall, Duggan Róisín, Shovlin Ben, Ó Cróinín Tadhg, Byrne Kevin P, O'Brien Caoimhe E, Wolfe Kenneth H, Butler Geraldine

机构信息

School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Dublin, Ireland.

School of Medicine, Conway Institute, University College Dublin, Dublin, Ireland.

出版信息

Microbiol Resour Announc. 2019 Oct 31;8(44):e01257-19. doi: 10.1128/MRA.01257-19.

Abstract

We sequenced two isolates of , UCD13 and UCD335, from soil in Ireland. Heterozygosity in these diploid genomes differs 19-fold between the two strains. Most currently available genome sequences come from Korean kimchi isolates, so our data will facilitate analysis of diversity in this species.

摘要

我们对从爱尔兰土壤中分离出的两个菌株UCD13和UCD335进行了测序。这两个二倍体基因组的杂合性在两个菌株之间相差19倍。目前大多数可用的基因组序列来自韩国泡菜分离株,因此我们的数据将有助于分析该物种的多样性。

相似文献

1
Draft Genome Sequences of Two Isolates of the Yeast Kazachstania servazzii Recovered from Soil in Ireland.
Microbiol Resour Announc. 2019 Oct 31;8(44):e01257-19. doi: 10.1128/MRA.01257-19.
3
Draft Genome Sequence of the Yeast Kazachstania telluris CBS 16338 Isolated from Forest Soil in Ireland.
Mycopathologia. 2020 Jun;185(3):587-590. doi: 10.1007/s11046-020-00449-6. Epub 2020 Apr 30.
4
Kazachstania siamensis sp. nov., an ascomycetous yeast species from forest soil in Thailand.
Int J Syst Evol Microbiol. 2007 Feb;57(Pt 2):419-422. doi: 10.1099/ijs.0.64539-0.
6
Kazachstania ichnusensis sp. nov., a diploid homothallic ascomycetous yeast from Sardinian lentisk rhizosphere.
Int J Syst Evol Microbiol. 2012 Mar;62(Pt 3):722-727. doi: 10.1099/ijs.0.032243-0. Epub 2011 Apr 15.
8
Kazachstania yasuniensis sp. nov., an ascomycetous yeast species found in mainland Ecuador and on the Galápagos.
Int J Syst Evol Microbiol. 2015 Apr;65(Pt 4):1304-1309. doi: 10.1099/ijs.0.000102. Epub 2015 Feb 2.
9
Kazachstania aquatica sp. nov. and Kazachstania solicola sp. nov., novel ascomycetous yeast species.
Int J Syst Evol Microbiol. 2005 Sep;55(Pt 5):2219-2224. doi: 10.1099/ijs.0.63675-0.
10

本文引用的文献

1
Community structures and genomic features of undesirable white colony-forming yeasts on fermented vegetables.
J Microbiol. 2019 Jan;57(1):30-37. doi: 10.1007/s12275-019-8487-y. Epub 2018 Oct 25.
2
Genome evolution across 1,011 Saccharomyces cerevisiae isolates.
Nature. 2018 Apr;556(7701):339-344. doi: 10.1038/s41586-018-0030-5. Epub 2018 Apr 11.
4
Redundans: an assembly pipeline for highly heterozygous genomes.
Nucleic Acids Res. 2016 Jul 8;44(12):e113. doi: 10.1093/nar/gkw294. Epub 2016 Apr 29.
7
QUAST: quality assessment tool for genome assemblies.
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
8
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Genome Res. 2010 Sep;20(9):1297-303. doi: 10.1101/gr.107524.110. Epub 2010 Jul 19.
9
The Sequence Alignment/Map format and SAMtools.
Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8.
10
Fast and accurate short read alignment with Burrows-Wheeler transform.
Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验