Kajiya-Kanegae Hiromi, Yabe Shiori, Yoshida Hiroe, Ebana Kaworu, Yamasaki Masanori, Nakagawa Hiroshi, Iwata Hiroyoshi
Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Science, The University of Tokyo, Japan.
Institute of Crop Science, NARO, Japan.
Data Brief. 2019 Sep 20;27:104546. doi: 10.1016/j.dib.2019.104546. eCollection 2019 Dec.
L. 'Takanari' is one of the most productive cultivars [1,2]. Reciprocal chromosome segment substitution lines (CSSLs) derived from a cross between 'Koshihikari' and 'Takanari' are useful tools for the detection and precise mapping of target quantitative trait loci (QTL) in 'Takanari'. Although the available Os-Nipponbare-Reference-IRGSP-1.0 reference genome is available and useful for evaluating genetic diversity among cultivars, it is not always useful for evaluating genetic diversity harbored by cultivars such as 'Takanari'. To reveal sequence variants in 'Takanari' and to exploit these variants in rice breeding programs, the whole genome of 'Takanari' was sequenced using a combination of Illumina HiSeq X Ten (20,983,495 reads and %GC 43) and PacBio (2,847,220 high-quality subreads). NGS data obtained have been deposited in the DNA Data Bank of Japan (DDBJ) under accession number DRA007557.
“丰锦”是产量最高的品种之一[1,2]。由“越光”和“丰锦”杂交产生的相互染色体片段代换系（CSSLs）是检测和精确定位“丰锦”中目标数量性状基因座（QTL）的有用工具。尽管现有的日本晴参考基因组Os-Nipponbare-Reference-IRGSP-1.0可用于评估品种间的遗传多样性，但它并不总是有助于评估“丰锦”等品种所具有的遗传多样性。为了揭示“丰锦”中的序列变异并在水稻育种计划中利用这些变异，我们结合Illumina HiSeq X Ten（20,983,495条 reads，%GC 43）和PacBio（2,847,220条高质量子reads）对“丰锦”的全基因组进行了测序。获得的NGS数据已存入日本DNA数据库（DDBJ），登录号为DRA007557。
