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光谱证据表明 IsdG 通过电子控制血红素羟化。

Spectroscopic Evidence for Electronic Control of Heme Hydroxylation by IsdG.

机构信息

Department of Chemistry , University of Vermont , Burlington , Vermont 05405 , United States.

出版信息

Inorg Chem. 2019 Nov 18;58(22):15455-15465. doi: 10.1021/acs.inorgchem.9b02530. Epub 2019 Nov 6.

Abstract

IsdG catalyzes a unique trioxygenation of heme to staphylobilin, and the data presented in this article elucidate the mechanism of the novel chemical transformation. More specifically, the roles of the second-sphere Asn and Trp residues in the monooxygenation of ferric-peroxoheme have been clarified via spectroscopic characterization of the ferric-azidoheme analogue. Analysis of UV/vis absorption data quantified the strength of the hydrogen bond that exists between the Asn7 side chain and the azide moiety of ferric-azidoheme. X-band electron paramagnetic resonance data were acquired and analyzed, which revealed that this hydrogen bond weakens the π-donor strength of the azide, resulting in perturbations of the Fe 3d based orbitals. Finally, nuclear magnetic resonance characterization of C-enriched samples demonstrated that the Asn7···N hydrogen bond triggers partial porphyrin to iron electron transfer, resulting in spin density delocalization onto the heme meso carbons. These spectroscopic experiments were complemented by combined quantum mechanics/molecular mechanics computational modeling, which strongly suggested that the electronic structure changes observed for the N7A variant arose from loss of the Asn7···N hydrogen bond as opposed to a decrease in porphyrin ruffling. From these data a fascinating picture emerges where an Asn7···N hydrogen bond is communicated through four bonds, resulting in meso carbons with partial cationic radical character that are poised for hydroxylation. This chemistry is not observed in other heme proteins because Asn7 and Trp67 must work in concert to trigger the requisite electronic structure change.

摘要

IsdG 催化血红素独特的三氧化,本文呈现的数据阐明了这一新颖化学转化的机制。更具体地说,通过对 ferric-azidoheme 的类似物的光谱特征研究,阐明了第二壳层 Asn 和 Trp 残基在 ferric-peroxoheme 单加氧中的作用。对紫外/可见吸收数据的分析量化了 Asn7 侧链与 ferric-azidoheme 的叠氮部分之间氢键的强度。获得并分析了 X 波段电子顺磁共振数据,结果表明该氢键削弱了叠氮的π供电子强度,导致 Fe 3d 基轨道的扰动。最后,对富含 C 的样品的核磁共振表征表明,Asn7···N 氢键触发部分卟啉到铁的电子转移,导致自旋密度离域到血红素中卟啉碳原子上。这些光谱实验得到了量子力学/分子力学计算模型的补充,该模型强烈表明,N7A 变体观察到的电子结构变化是由于 Asn7···N 氢键的丢失而不是卟啉皱缩引起的。从这些数据中得出了一个有趣的结论,即 Asn7···N 氢键通过四个键传递,导致具有部分正电荷特征的中卟啉碳原子,为羟化作用做好准备。这种化学性质在其他血红素蛋白中观察不到,因为 Asn7 和 Trp67 必须协同作用才能引发所需的电子结构变化。

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