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本文引用的文献

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A Single Mutation in the Mycobacterium tuberculosis Heme-Degrading Protein, MhuD, Results in Different Products.结核分枝杆菌血红素降解蛋白 MhuD 中的单个突变导致不同的产物。
Biochemistry. 2019 Feb 12;58(6):489-492. doi: 10.1021/acs.biochem.8b01198. Epub 2019 Jan 9.
2
Tight binding of heme to Staphylococcus aureus IsdG and IsdI precludes design of a competitive inhibitor.血红素与金黄色葡萄球菌IsdG和IsdI的紧密结合阻碍了竞争性抑制剂的设计。
Metallomics. 2017 May 24;9(5):556-563. doi: 10.1039/c7mt00035a.
3
Dynamic ruffling distortion of the heme substrate in non-canonical heme oxygenase enzymes.非典型血红素加氧酶中血红素底物的动态褶皱畸变
Dalton Trans. 2016 Jun 14;45(24):10058-67. doi: 10.1039/c6dt00702c.
4
Measurement of Heme Ruffling Changes in MhuD Using UV-vis Spectroscopy.使用紫外可见光谱法测量MhuD中血红素褶皱变化
J Phys Chem B. 2016 Apr 28;120(16):3844-53. doi: 10.1021/acs.jpcb.6b01497. Epub 2016 Apr 14.
5
Unique coupling of mono- and dioxygenase chemistries in a single active site promotes heme degradation.单个活性位点中一元加氧酶和二元加氧酶化学的独特偶联促进血红素降解。
Proc Natl Acad Sci U S A. 2016 Apr 5;113(14):3779-84. doi: 10.1073/pnas.1523333113. Epub 2016 Mar 22.
6
High Affinity Heme Binding to a Heme Regulatory Motif on the Nuclear Receptor Rev-erbβ Leads to Its Degradation and Indirectly Regulates Its Interaction with Nuclear Receptor Corepressor.高亲和力血红素与核受体Rev-erbβ上的血红素调节基序结合导致其降解,并间接调节其与核受体共抑制因子的相互作用。
J Biol Chem. 2016 Jan 29;291(5):2196-222. doi: 10.1074/jbc.M115.670281. Epub 2015 Dec 15.
7
Time-resolved Studies of IsdG Protein Identify Molecular Signposts along the Non-canonical Heme Oxygenase Pathway.对IsdG蛋白的时间分辨研究确定了非经典血红素加氧酶途径上的分子路标。
J Biol Chem. 2016 Jan 8;291(2):862-71. doi: 10.1074/jbc.M115.666560. Epub 2015 Nov 3.
8
Ligand Binding to Chlorite Dismutase from Magnetospirillum sp.配体与嗜磁螺菌亚氯酸盐歧化酶的结合
J Phys Chem B. 2015 Oct 29;119(43):13859-69. doi: 10.1021/acs.jpcb.5b04141. Epub 2015 Aug 24.
9
Hydrogen bond donation to the heme distal ligand of Staphylococcus aureus IsdG tunes the electronic structure.向金黄色葡萄球菌IsdG的血红素远端配体提供氢键会调节其电子结构。
J Biol Inorg Chem. 2015 Jul;20(5):757-70. doi: 10.1007/s00775-015-1263-5. Epub 2015 Apr 25.
10
A Ferric-Peroxo Intermediate in the Oxidation of Heme by IsdI.铁-过氧中间体在IsdI对血红素的氧化作用中。
Biochemistry. 2015 Apr 28;54(16):2613-21. doi: 10.1021/acs.biochem.5b00239. Epub 2015 Apr 16.

光谱证据表明 IsdG 通过电子控制血红素羟化。

Spectroscopic Evidence for Electronic Control of Heme Hydroxylation by IsdG.

机构信息

Department of Chemistry , University of Vermont , Burlington , Vermont 05405 , United States.

出版信息

Inorg Chem. 2019 Nov 18;58(22):15455-15465. doi: 10.1021/acs.inorgchem.9b02530. Epub 2019 Nov 6.

DOI:10.1021/acs.inorgchem.9b02530
PMID:31693363
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7202882/
Abstract

IsdG catalyzes a unique trioxygenation of heme to staphylobilin, and the data presented in this article elucidate the mechanism of the novel chemical transformation. More specifically, the roles of the second-sphere Asn and Trp residues in the monooxygenation of ferric-peroxoheme have been clarified via spectroscopic characterization of the ferric-azidoheme analogue. Analysis of UV/vis absorption data quantified the strength of the hydrogen bond that exists between the Asn7 side chain and the azide moiety of ferric-azidoheme. X-band electron paramagnetic resonance data were acquired and analyzed, which revealed that this hydrogen bond weakens the π-donor strength of the azide, resulting in perturbations of the Fe 3d based orbitals. Finally, nuclear magnetic resonance characterization of C-enriched samples demonstrated that the Asn7···N hydrogen bond triggers partial porphyrin to iron electron transfer, resulting in spin density delocalization onto the heme meso carbons. These spectroscopic experiments were complemented by combined quantum mechanics/molecular mechanics computational modeling, which strongly suggested that the electronic structure changes observed for the N7A variant arose from loss of the Asn7···N hydrogen bond as opposed to a decrease in porphyrin ruffling. From these data a fascinating picture emerges where an Asn7···N hydrogen bond is communicated through four bonds, resulting in meso carbons with partial cationic radical character that are poised for hydroxylation. This chemistry is not observed in other heme proteins because Asn7 and Trp67 must work in concert to trigger the requisite electronic structure change.

摘要

IsdG 催化血红素独特的三氧化,本文呈现的数据阐明了这一新颖化学转化的机制。更具体地说,通过对 ferric-azidoheme 的类似物的光谱特征研究,阐明了第二壳层 Asn 和 Trp 残基在 ferric-peroxoheme 单加氧中的作用。对紫外/可见吸收数据的分析量化了 Asn7 侧链与 ferric-azidoheme 的叠氮部分之间氢键的强度。获得并分析了 X 波段电子顺磁共振数据,结果表明该氢键削弱了叠氮的π供电子强度,导致 Fe 3d 基轨道的扰动。最后,对富含 C 的样品的核磁共振表征表明,Asn7···N 氢键触发部分卟啉到铁的电子转移,导致自旋密度离域到血红素中卟啉碳原子上。这些光谱实验得到了量子力学/分子力学计算模型的补充,该模型强烈表明,N7A 变体观察到的电子结构变化是由于 Asn7···N 氢键的丢失而不是卟啉皱缩引起的。从这些数据中得出了一个有趣的结论,即 Asn7···N 氢键通过四个键传递,导致具有部分正电荷特征的中卟啉碳原子,为羟化作用做好准备。这种化学性质在其他血红素蛋白中观察不到,因为 Asn7 和 Trp67 必须协同作用才能引发所需的电子结构变化。