Department of Marine Biosciences, Tokyo University of Marine Science and Technology, 4-5-7 Konan, Minato-ku, Tokyo 108-8477, Japan.
Biological Resource Center, National Institute of Technology and Evaluation (NBRC), 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan.
Int J Syst Evol Microbiol. 2019 Dec;69(12):3740-3744. doi: 10.1099/ijsem.0.003638.
A novel actinobacterium producing biosurfactant, designated OTB305, was isolated from marine sediment sampled at Otsuchi Bay, Iwate Prefecture, Japan and its taxonomic position was examined using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences exhibited that strain OTB305 was closely related to JCM 19630 (98.8 %) and DSM 42084 (98.8 %). The chemotaxonomic characteristics of strain OTB305 corresponded to those of the genus as follows: the diamino acid of the cell-wall peptidoglycan was ll-diaminopimelic acid; whole-cell hydrolysates contained glucose and lacked characteristic major sugars; the predominant isoprenoid quinones were MK-9(H) and MK-9(H); the polar lipids were phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and an unidentified phospholipid; the major cellular fatty acids were iso-C, C and C 7; and the genomic DNA G+C content was 72.83 mol%. However, genomic relatedness analysis based on the average nucleotide identity and some phenotypic characteristics revealed that strain OTB305 was distinguished from closely related species. Therefore, strain OTB305 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is OTB305 (=NBRC 113255=TBRC 9682).
一株产生物表面活性剂的新放线菌,命名为 OTB305,从日本岩手县大船渡湾的海洋沉积物中分离得到,并采用多相分类法研究了其分类地位。基于 16S rRNA 基因序列的系统发育分析表明,菌株 OTB305与 JCM 19630(98.8%)和 DSM 42084(98.8%)密切相关。菌株 OTB305 的化学分类特征与属的特征相对应,如下所示:细胞壁肽聚糖的二氨基氨基酸是 ll-二氨基庚二酸;全细胞水解物含有葡萄糖,缺乏特征性的主要糖;主要的异戊烯醌是 MK-9(H)和 MK-9(H);极性脂是磷脂酰甘油、磷脂酰乙醇胺、磷脂酰肌醇和一种未鉴定的磷脂;主要的细胞脂肪酸是 iso-C 15:0、C 16:0 和 C 17:0;基因组 DNA G+C 含量为 72.83 mol%。然而,基于平均核苷酸同一性的基因组相关性分析和一些表型特征表明,菌株 OTB305与密切相关的种不同。因此,菌株 OTB305 代表了属的一个新种,建议命名为 sp. nov.。其模式菌株是 OTB305(=NBRC 113255=TBRC 9682)。