• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

DNA 中的空穴转移动力学。

The Dynamics of Hole Transfer in DNA.

机构信息

Dipartimento di Chimica e Biologia "A. Zambelli", Università di Salerno, via Giovanni Paolo II, 132, I-84084 Fisciano (SA), Italy.

出版信息

Molecules. 2019 Nov 7;24(22):4044. doi: 10.3390/molecules24224044.

DOI:10.3390/molecules24224044
PMID:31703470
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6891780/
Abstract

High-energy radiation and oxidizing agents can ionize DNA. One electron oxidation gives rise to a radical cation whose charge (hole) can migrate through DNA covering several hundreds of Å, eventually leading to irreversible oxidative damage and consequent disease. Understanding the thermodynamic, kinetic and chemical aspects of the hole transport in DNA is important not only for its biological consequences, but also for assessing the properties of DNA in redox sensing or labeling. Furthermore, due to hole migration, DNA could potentially play an important role in nanoelectronics, by acting as both a template and active component. Herein, we review our work on the dynamics of hole transfer in DNA carried out in the last decade. After retrieving the thermodynamic parameters needed to address the dynamics of hole transfer by voltammetric and spectroscopic experiments and quantum chemical computations, we develop a theoretical methodology which allows for a faithful interpretation of the kinetics of the hole transport in DNA and is also capable of taking into account sequence-specific effects.

摘要

高能辐射和氧化剂可以使 DNA 发生电离。单电子氧化会产生自由基阳离子,其电荷(空穴)可以通过 DNA 迁移几百埃,最终导致不可逆转的氧化损伤和随之而来的疾病。了解 DNA 中空穴传输的热力学、动力学和化学方面不仅对于其生物学后果很重要,而且对于评估 DNA 在氧化还原传感或标记中的性质也很重要。此外,由于空穴迁移,DNA 有可能通过充当模板和活性成分在纳米电子学中发挥重要作用。在此,我们回顾了过去十年中我们在 DNA 中空穴转移动力学方面的工作。在通过伏安法和光谱实验以及量子化学计算检索到解决空穴转移动力学所需的热力学参数之后,我们开发了一种理论方法,该方法能够忠实地解释 DNA 中空穴输运的动力学,并且还能够考虑到序列特异性效应。

相似文献

1
The Dynamics of Hole Transfer in DNA.DNA 中的空穴转移动力学。
Molecules. 2019 Nov 7;24(22):4044. doi: 10.3390/molecules24224044.
2
What governs the charge transfer in DNA? The role of DNA conformation and environment.是什么控制着DNA中的电荷转移?DNA构象和环境的作用。
J Phys Chem B. 2008 Jul 24;112(29):8788-98. doi: 10.1021/jp803661f. Epub 2008 Jun 27.
3
Chromophore/DNA interactions: femto- to nanosecond spectroscopy, NMR structure, and electron transfer theory.发色团/DNA相互作用:飞秒至纳秒光谱学、核磁共振结构及电子转移理论
J Phys Chem B. 2008 Jan 24;112(3):973-89. doi: 10.1021/jp076405o. Epub 2007 Dec 29.
4
Charge migration in DNA: ion-gated transport.DNA中的电荷迁移:离子门控转运。
Science. 2001 Oct 19;294(5542):567-71. doi: 10.1126/science.1062864.
5
Deep-hole transfer leads to ultrafast charge migration in DNA hairpins.深孔转移导致 DNA 发夹中超快的电荷迁移。
Nat Chem. 2016 Nov;8(11):1015-1021. doi: 10.1038/nchem.2590. Epub 2016 Aug 15.
6
Direct measurement of hole transport dynamics in DNA.DNA中空穴传输动力学的直接测量。
Nature. 2000 Jul 6;406(6791):51-3. doi: 10.1038/35017524.
7
Study of DNA conducting properties: reversible and irreversible evolution.DNA 导电机理研究:可逆与不可逆进化。
Biophys Chem. 2013 Oct-Nov;180-181:95-101. doi: 10.1016/j.bpc.2013.06.014. Epub 2013 Jul 4.
8
Dynamics and energetics of single-step hole transport in DNA hairpins.DNA发夹中单步空穴传输的动力学与能量学
J Am Chem Soc. 2003 Apr 23;125(16):4850-61. doi: 10.1021/ja029390a.
9
Quantum dynamics of a hole migration through DNA: A single strand DNA model.
Biophys Chem. 2016 Oct;217:42-57. doi: 10.1016/j.bpc.2016.07.003. Epub 2016 Jul 21.
10
The Time Scale of Electronic Resonance in Oxidized DNA as Modulated by Solvent Response: An MD/QM-MM Study.氧化 DNA 中电子共振的时间尺度受溶剂响应调节:MD/QM-MM 研究。
Molecules. 2021 Sep 10;26(18):5497. doi: 10.3390/molecules26185497.

引用本文的文献

1
Computational Prediction of One-Electron Oxidation Potentials for Cytosine and Uracil Epigenetic Derivatives.胞嘧啶和尿嘧啶表观遗传衍生物单电子氧化电位的计算预测
J Phys Chem A. 2025 May 22;129(20):4339-4356. doi: 10.1021/acs.jpca.4c06944. Epub 2025 Apr 8.
2
Hole Transfer and the Resulting DNA Damage.空穴转移与由此产生的DNA损伤。
Biomolecules. 2024 Dec 30;15(1):29. doi: 10.3390/biom15010029.
3
DNA damage and repair in the nucleosome: insights from computational methods.核小体中的DNA损伤与修复:计算方法带来的见解

本文引用的文献

1
Transient and Enduring Electronic Resonances Drive Coherent Long Distance Charge Transport in Molecular Wires.瞬态和持久电子共振驱动分子导线中的相干长距离电荷传输。
J Phys Chem Lett. 2019 Apr 18;10(8):1845-1851. doi: 10.1021/acs.jpclett.9b00650. Epub 2019 Apr 4.
2
Temperature Dependence of the Rate of Intramolecular Electron Transfer.温度对分子内电子转移速率的影响。
J Phys Chem B. 2018 Sep 27;122(38):8824-8833. doi: 10.1021/acs.jpcb.8b06497. Epub 2018 Sep 13.
3
Single-Stranded DNA Oligonucleotides Retain Rise Coordinates Characteristic of Double Helices.
Biophys Rev. 2024 Mar 12;16(3):345-356. doi: 10.1007/s12551-024-01183-9. eCollection 2024 Jun.
4
DNA as a perfect quantum computer based on the quantum physics principles.基于量子物理原理的作为完美量子计算机的DNA。
Sci Rep. 2024 May 21;14(1):11636. doi: 10.1038/s41598-024-62539-5.
5
Hydroxyl Radical vs. One-Electron Oxidation Reactivities in an Alternating GC Double-Stranded Oligonucleotide: A New Type Electron Hole Stabilization.羟基自由基与交替 GC 双链寡核苷酸中单电子氧化反应活性:一种新型电子空穴稳定化。
Biomolecules. 2023 Oct 8;13(10):1493. doi: 10.3390/biom13101493.
6
Short-Range Charge Transfer in DNA Base Triplets: Real-Time Tracking of Coherent Fluctuation Electron Transfer.DNA 三联体中的短程电荷转移:相干涨落电子转移的实时追踪。
Molecules. 2023 Sep 25;28(19):6802. doi: 10.3390/molecules28196802.
7
Secondary Electron Attachment-Induced Radiation Damage to Genetic Materials.二次电子附着诱导的遗传物质辐射损伤
ACS Omega. 2023 Mar 15;8(12):10669-10689. doi: 10.1021/acsomega.2c06776. eCollection 2023 Mar 28.
8
Fluorescence Detecting of Paraquat and Diquat Using Host-Guest Chemistry with a Fluorophore-Pendant Calix[6]arene.荧光检测百草枯和敌草快的主体-客体化学作用与荧光基团修饰杯[6]芳烃。
Sensors (Basel). 2023 Jan 18;23(3):1120. doi: 10.3390/s23031120.
9
Duplex DNA Retains the Conformational Features of Single Strands: Perspectives from MD Simulations and Quantum Chemical Computations.双链 DNA 保留单链的构象特征:来自 MD 模拟和量子化学计算的观点。
Int J Mol Sci. 2022 Nov 21;23(22):14452. doi: 10.3390/ijms232214452.
10
Modeling Charge Transfer Reactions by Hopping between Electronic Ground State Minima: Application to Hole Transfer between DNA Bases.通过在电子基态能极小值之间的跳跃来模拟电荷转移反应:在 DNA 碱基之间的空穴转移中的应用。
Molecules. 2022 Nov 1;27(21):7408. doi: 10.3390/molecules27217408.
单链 DNA 寡核苷酸保留双螺旋的螺旋坐标特征。
J Phys Chem B. 2018 Aug 23;122(33):7978-7989. doi: 10.1021/acs.jpcb.8b04542. Epub 2018 Aug 14.
4
Formulation of Long-Range Transport Rates through Molecular Bridges: From Unfurling to Hopping.通过分子桥的长程传输速率公式:从未展开到跳跃
J Phys Chem Lett. 2018 Aug 2;9(15):4139-4145. doi: 10.1021/acs.jpclett.8b01581. Epub 2018 Jul 12.
5
Sensing DNA through DNA Charge Transport.通过 DNA 电荷输运感知 DNA。
ACS Chem Biol. 2018 Jul 20;13(7):1799-1809. doi: 10.1021/acschembio.8b00347. Epub 2018 Jun 1.
6
Selective Enhancement of the One-Electron Oxidation of Guanine by Base Pairing with Cytosine.
Angew Chem Int Ed Engl. 2000 Dec 1;39(23):4327-4329. doi: 10.1002/1521-3773(20001201)39:23<4327::AID-ANIE4327>3.0.CO;2-6.
7
Electron-Transfer Dynamics in a Zn-Porphyrin-Quinone Cyclophane: Effects of Solvent, Vibrational Relaxations, and Conical Intersections.锌卟啉 - 醌环番中的电子转移动力学:溶剂、振动弛豫和锥形交叉点的影响
J Phys Chem B. 2018 Apr 12;122(14):3854-3863. doi: 10.1021/acs.jpcb.8b01072. Epub 2018 Mar 30.
8
Effects of Free Energy and Solvent on Rates of Intramolecular Electron Transfer in Organic Radical Anions.自由能和溶剂对有机自由基阴离子分子内电子转移速率的影响。
J Phys Chem A. 2017 Sep 28;121(38):7297-7306. doi: 10.1021/acs.jpca.7b08579. Epub 2017 Sep 14.
9
Length-independent transport rates in biomolecules by quantum mechanical unfurling.通过量子力学展开实现生物分子中与长度无关的传输速率。
Chem Sci. 2016 Feb 1;7(2):1535-1542. doi: 10.1039/c5sc03495g. Epub 2015 Nov 20.
10
Efficient Long-Range Hole Transport Through G-Quadruplexes.
Chemistry. 2017 Oct 9;23(56):13980-13985. doi: 10.1002/chem.201702478. Epub 2017 Sep 7.