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使用包含色散校正计算和分子动力学模拟的密度泛函理论,深入了解卡莫司汀药物在硼和氮掺杂功能化单壁碳纳米管上的吸附亲和力。

Molecular insight into adsorption affinities of Carmustine drug on boron and nitrogen doped functionalized single-walled carbon nanotubes using density functional theory including dispersion correction calculations and molecular dynamics simulation.

机构信息

Chemistry Department, University of Birjand, Birjand, Iran.

出版信息

J Biomol Struct Dyn. 2020 Oct;38(16):4817-4826. doi: 10.1080/07391102.2019.1692071. Epub 2019 Nov 20.

Abstract

We report a quantum mechanics calculation and molecular dynamics simulation study of Carmustine drug (BNU) adsorption on the surface of nitrogen (N) and boron (B) doped-functionalized single-walled carbon nanotubes. The stability of the optimized complexes is determined on the basis of relative adsorption energy (ΔE). The ΔE results claim that drug molecule tends to adsorb on the nitrogen and boron doped functionalized tubes with the energy values in the range of -61.177 to -95.806 kJ/mol. Based on the obtained results, it is observed that N-doping compared with B-doping has improved more effectively drug absorption on the surface of functionalized nanotube. The results of Atoms in Molecule calculations indicate that drug adsorbs molecularly via hydrogen bonds interactions on the surface doped-functionalized carbon nanotubes. Moreover, molecular dynamics simulation is performed to investigate the dynamics behavior of the drug molecules on the nitrogen-doped functionalized carbon nanotube (f-NNT) and functionalized carbon nanotube (f-CNT). The higher average calculated electrostatic and van der Waals energies as well as higher number of intermolecular hydrogen bonds in BNU-f-NNT in comparison with BNU-f-CNT model suggest the more effectual interaction between drug molecules and nitrogen-doped functionalized carbon nanotube.Communicated by Ramaswamy H. Sarma.

摘要

我们报告了一个关于卡莫司汀(BNU)药物在氮(N)和硼(B)掺杂功能化单壁碳纳米管表面吸附的量子力学计算和分子动力学模拟研究。根据相对吸附能(ΔE)确定优化配合物的稳定性。ΔE 结果表明,药物分子倾向于在能量值在-61.177 到-95.806 kJ/mol 范围内的氮和硼掺杂功能化管上吸附。根据所得结果,观察到与硼掺杂相比,氮掺杂更有效地改善了药物在功能化纳米管表面的吸收。分子中原子计算的结果表明,药物通过氢键相互作用在掺杂功能化碳纳米管表面分子吸附。此外,进行了分子动力学模拟以研究氮掺杂功能化碳纳米管(f-NNT)和功能化碳纳米管(f-CNT)上药物分子的动力学行为。与 BNU-f-CNT 模型相比,BNU-f-NNT 中计算得到的平均静电和范德华能更高,分子间氢键数量更多,表明药物分子与氮掺杂功能化碳纳米管之间的相互作用更强。由拉马萨马·H·萨玛传达。

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