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基于密度泛函理论研究和分子动力学模拟探究抗癌药物青霉胺与原始和功能化碳纳米管相互作用及其在医疗中的应用。

Modeling the interaction between anti-cancer drug penicillamine and pristine and functionalized carbon nanotubes for medical applications: density functional theory investigation and a molecular dynamics simulation.

机构信息

Department of Chemistry, Payame Noor University, Mashahd, Iran.

Department of Chemistry, University of Birjand, Birjand, Iran.

出版信息

J Biomol Struct Dyn. 2020 Mar;38(5):1322-1334. doi: 10.1080/07391102.2019.1602080. Epub 2019 Apr 19.

DOI:10.1080/07391102.2019.1602080
PMID:31002028
Abstract

The present study focuses on the prediction and investigation of binding properties of penicillamine with pure (5,5) single-walled carbon nanotube (SWCNT) and functionalized SWCNT (-SWCNT) through the B3LYP and M06-2X functionals using the 6-31G** basis set. The electronic and structural properties, adsorption energy and frontier molecular orbitals of various configurations are examined. Our theoretical results indicated that the interaction of the nanotubes with penicillamine molecule is weak so that the drug adsorption process is typically physisorption. Also, results of theoretical calculations show that the adsorption of the drug molecule on -SWCNT is stronger with shorter intermolecular distances in comparison to pure SWCNT. The natural bond orbital (NBO) analysis of studied systems demonstrates that the charge is transferred from penicillamine molecule to the nanotubes. Furthermore, molecular dynamics (MD) simulation is employed to evaluate the dynamic and diffusion behavior of drug molecule on SWCNT and -SWCNT. Energy results show that drug molecule spontaneously moves toward the carriers, and the van der Waals energy contributions in drug adsorption are more than electrostatic interaction. The obtained results from MD simulation confirm that the functionalization of SWCNT leads to increase in the solubility of the carrier in aqueous solution.Communicated by Ramaswamy H. Sarma.

摘要

本研究通过 B3LYP 和 M06-2X 泛函,使用 6-31G**基组,聚焦于预测和研究半胱氨酸与纯(5,5)单壁碳纳米管(SWCNT)和功能化 SWCNT(-SWCNT)之间的结合性质。研究了各种构型的电子和结构性质、吸附能和前沿分子轨道。我们的理论结果表明,纳米管与半胱氨酸分子的相互作用较弱,因此药物吸附过程通常是物理吸附。此外,理论计算结果表明,与纯 SWCNT 相比,药物分子在 -SWCNT 上的吸附更强,分子间距离更短。研究体系的自然键轨道(NBO)分析表明,电荷从半胱氨酸分子转移到纳米管上。此外,还采用分子动力学(MD)模拟来评估药物分子在 SWCNT 和 -SWCNT 上的动态和扩散行为。能量结果表明,药物分子自发地向载体移动,药物吸附中的范德华能贡献大于静电相互作用。MD 模拟得到的结果证实,SWCNT 的功能化导致载体在水溶液中的溶解度增加。由 Ramaswamy H. Sarma 传达。

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