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理解内在蛋白无序性在轮状病毒蛋白质组中的外显率。

Understanding the penetrance of intrinsic protein disorder in rotavirus proteome.

机构信息

Indian Institute of Technology Mandi, VPO Kamand, Himachal Pradesh 175005, India.

Department of Molecular Medicine and Byrd Alzheimer's Research Institute, Morsani College of Medicine, University of South Florida, Tampa, FL, United States.

出版信息

Int J Biol Macromol. 2020 Feb 1;144:892-908. doi: 10.1016/j.ijbiomac.2019.09.166. Epub 2019 Nov 15.

Abstract

Rotavirus is a major cause of severe acute gastroenteritis in the infants and young children. The past decade has evidenced the role of intrinsically disordered proteins/regions (IDPs)/(IDPRs) in viral and other diseases. In general, (IDPs)/(IDPRs) are considered as dynamic conformational ensembles that devoid of a specific 3D structure, being associated with various important biological phenomena. Viruses utilize IDPs/IDPRs to survive in harsh environments, to evade the host immune system, and to highjack and manipulate host cellular proteins. The role of IDPs/IDPRs in Rotavirus biology and pathogenicity are not assessed so far, therefore, we have designed this study to deeply look at the penetrance of intrinsic disorder in rotavirus proteome consisting 12 proteins encoded by 11 segments of viral genome. Also, for all human rotaviral proteins, we have deciphered molecular recognition features (MoRFs), which are disorder based binding sites in proteins. Our study shows the wide spread of intrinsic disorder in several rotavirus proteins, primarily the nonstructural proteins NSP3, NSP4, and NSP5 that are involved in viral replication, translation, viroplasm formation and/or maturation. This study may serve as a primer for understanding the role of IDPs/MoRFs in rotavirus biology, design of alternative therapeutic strategies, and development of disorder-based drugs.

摘要

轮状病毒是导致婴幼儿严重急性肠胃炎的主要原因。过去十年的研究表明,无规则蛋白质/区域(IDPs)/无规则蛋白质区域(IDPRs)在病毒和其他疾病中发挥着重要作用。一般来说,(IDPs)/(IDPRs)被认为是缺乏特定 3D 结构的动态构象集合,与各种重要的生物学现象有关。病毒利用 IDPs/IDPRs 在恶劣环境中生存,逃避宿主免疫系统,并劫持和操纵宿主细胞蛋白。目前,尚未评估 IDPs/IDPRs 在轮状病毒生物学和致病性中的作用,因此,我们设计了这项研究,以深入研究由病毒基因组 11 个片段编码的 12 种蛋白组成的轮状病毒蛋白组中固有无序的渗透作用。此外,对于所有人类轮状病毒蛋白,我们都破译了分子识别特征(MoRFs),这是蛋白质中基于无规则的结合位点。我们的研究表明,几种轮状病毒蛋白中存在广泛的固有无序,主要是参与病毒复制、翻译、质体形成和/或成熟的非结构蛋白 NSP3、NSP4 和 NSP5。这项研究可以作为理解 IDPs/MoRFs 在轮状病毒生物学、替代治疗策略设计和基于无序的药物开发中的作用的基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98d5/7112477/70054759509b/gr1_lrg.jpg

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