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含有结合障碍的体系中的分子输运。

Molecular transport in systems containing binding obstacles.

机构信息

Department of Molecular Physics, Łódź University of Technology, 90-924 Łódź, Poland.

出版信息

Soft Matter. 2019 Dec 11;15(48):10045-10054. doi: 10.1039/c9sm01876j.

DOI:10.1039/c9sm01876j
PMID:31769460
Abstract

We studied the movement of particles in crowded environments by means of extensive Monte Carlo simulations. The dynamic lattice liquid model was employed for this purpose. It is based on the cooperative movement concept and allows the study of systems at high densities. The cooperative model of molecular transport is assumed: the motion of all moving particles is highly correlated. The model is supposed to mimic lateral motion in a membrane and therefore the system is two-dimensional with moving objects and traps placed on a triangular lattice. In our study the interaction (binding) of traps with moving particles was assumed. The conditions in which subdiffusive motion appeared in the system were analysed. The influence of the strength of binding on the dynamic percolation threshold was also shown. The differences in the dynamics compared to systems with impenetrable obstacles and with systems without correlation in motion were presented and discussed. It was shown that in the case of correlated motion the influence of deep traps is similar to that of impenetrable obstacles. If the traps are shallow a recovery to normal diffusion was observed for longer time periods.

摘要

我们通过广泛的蒙特卡罗模拟研究了粒子在拥挤环境中的运动。为此目的,采用了动态格子液体模型。它基于协同运动的概念,允许在高密度下研究系统。假设分子输运的协同模型:所有移动粒子的运动高度相关。该模型旨在模拟膜中的横向运动,因此系统是二维的,移动物体和陷阱放置在三角形格子上。在我们的研究中,假设了陷阱与移动粒子的相互作用(结合)。分析了系统中出现亚扩散运动的条件。还显示了结合强度对动态渗流阈值的影响。与不可穿透障碍物的系统和运动无相关性的系统相比,展示并讨论了动力学方面的差异。结果表明,在相关运动的情况下,深阱的影响类似于不可穿透障碍物的影响。如果陷阱较浅,则在较长时间内观察到恢复到正常扩散。

相似文献

1
Molecular transport in systems containing binding obstacles.含有结合障碍的体系中的分子输运。
Soft Matter. 2019 Dec 11;15(48):10045-10054. doi: 10.1039/c9sm01876j.
2
Simulation of Molecular Transport in Systems Containing Mobile Obstacles.含移动障碍物系统中分子输运的模拟
J Phys Chem B. 2016 Aug 4;120(30):7529-37. doi: 10.1021/acs.jpcb.6b02682. Epub 2016 Jul 21.
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Motion in a crowded environment: the influence of obstacles' size and shape and model of transport.拥挤环境中的运动:障碍物大小和形状以及交通方式的影响
J Mol Model. 2019 Mar 2;25(3):84. doi: 10.1007/s00894-019-3968-9.
4
Comparison of different models of motion in a crowded environment: a Monte Carlo study.不同运动模型在拥挤环境中的比较:蒙特卡罗研究。
Soft Matter. 2017 Feb 22;13(8):1693-1701. doi: 10.1039/c6sm02308h.
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Diffusion of small particles in polymer films.聚合物薄膜中小粒子的扩散。
J Chem Phys. 2017 Jul 7;147(1):014902. doi: 10.1063/1.4990414.
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Simulation of diffusion in a crowded environment.拥挤环境中扩散的模拟。
Soft Matter. 2014 May 28;10(20):3597-607. doi: 10.1039/c3sm52861h. Epub 2014 Mar 24.
7
Effects of soft interactions and bound mobility on diffusion in crowded environments: a model of sticky and slippery obstacles.软相互作用和束缚流动性对拥挤环境中扩散的影响:粘性和滑性障碍物模型
Phys Biol. 2017 Jun 29;14(4):045008. doi: 10.1088/1478-3975/aa7869.
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Ideal circle microswimmers in crowded media.理想的圆形微游泳者在拥挤的介质中。
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Optimized Diffusion of Run-and-Tumble Particles in Crowded Environments.优化在拥挤环境中运行和翻转粒子的扩散。
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