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使用合成回路证明双组分系统的稳健性。

Evidence of Robustness in a Two-Component System Using a Synthetic Circuit.

机构信息

Department of Chemistry, Bose Institute, Kolkata, India.

Department of Chemistry, Bose Institute, Kolkata, India

出版信息

J Bacteriol. 2020 Jan 29;202(4). doi: 10.1128/JB.00672-19.

Abstract

Variation in the concentration of biological components is inescapable for any cell. Robustness in any biological circuit acts as a cushion against such variation and enables the cells to produce homogeneous output despite the fluctuation. The two-component system (TCS) with a bifunctional sensor kinase (that possesses both kinase and phosphatase activities) is proposed to be a robust circuit. Few theoretical models explain the robustness of a TCS, although the criteria and extent of robustness by these models differ. Here, we provide experimental evidence to validate the extent of the robustness of a TCS signaling pathway. We have designed a synthetic circuit in using a representative TCS of , MprAB, and monitored the output signal by systematically varying the concentration of either of the components or both. We observed that the output of the TCS is robust if the concentration of MprA is above a threshold value. This observation is further substantiated by two assays, in which we estimated the phosphorylated MprA pool or MprA-dependent transcription yield by varying either of the components of the TCS. This synthetic circuit could be used as a model system to analyze the relationship among different components of gene regulatory networks. Robustness in essential biological circuits is an important feature of the living organism. A few pieces of evidence support the existence of robustness in the two-component system (TCS) with a bifunctional sensor kinase (SK). The assays were done under physiological conditions in which the SK was much lower than the response regulator (RR). Here, using a synthetic circuit, we varied the concentrations of the SK and RR of a representative TCS to monitor output robustness assays were also performed under conditions where the concentration of the SK was greater than that of the RR. Our results demonstrate the extent of output robustness in the TCS signaling pathway with respect to the concentrations of the two components.

摘要

任何细胞的生物成分浓度都会发生变化。任何生物回路的稳健性都起到了缓冲作用,可以防止这种变化,并使细胞能够产生均匀的输出,尽管存在波动。具有双功能传感器激酶(同时具有激酶和磷酸酶活性)的双组分系统(TCS)被认为是一种稳健的电路。尽管这些模型的标准和稳健性程度不同,但很少有理论模型可以解释 TCS 的稳健性。在这里,我们提供实验证据来验证 TCS 信号通路的稳健性程度。我们使用代表性 TCS MprAB 设计了一个合成电路,并通过系统地改变任一组分或两组分的浓度来监测 输出信号。我们观察到,如果 MprA 的浓度高于阈值,则 TCS 的输出是稳健的。通过两种 测定进一步证实了这一观察结果,我们通过改变 TCS 的任一组分来估计磷酸化 MprA 池或 MprA 依赖性转录产量。这个合成电路可以作为一个模型系统来分析基因调控网络的不同组成部分之间的关系。在基本生物回路中稳健性是生物体的一个重要特征。有一些证据支持具有双功能传感器激酶(SK)的双组分系统(TCS)存在稳健性。这些测定是在生理条件下进行的,其中 SK 远低于反应调节剂(RR)。在这里,我们使用合成电路改变了代表性 TCS 的 SK 和 RR 的浓度来监测输出稳健性。在 SK 浓度大于 RR 浓度的条件下也进行了测定。我们的结果证明了 TCS 信号通路在两个组分浓度下的输出稳健性程度。

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