Suppr超能文献

细菌双组分信号转导中的滞后和分级反应。

Hysteretic and graded responses in bacterial two-component signal transduction.

作者信息

Igoshin Oleg A, Alves Rui, Savageau Michael A

机构信息

Department of Bioengineering, Rice University, Houston, TX 77251-1892, USA.

出版信息

Mol Microbiol. 2008 Jun;68(5):1196-215. doi: 10.1111/j.1365-2958.2008.06221.x. Epub 2008 Mar 19.

Abstract

Bacterial two-component systems (TCS) are key signal transduction networks regulating global responses to environmental change. Environmental signals may modulate the phosphorylation state of sensor kinases (SK). The phosphorylated SK transfers the phosphate to its cognate response regulator (RR), which causes physiological response to the signal. Frequently, the SK is bifunctional and, when unphosphorylated, it is also capable of dephosphorylating the RR. The phosphatase activity may also be modulated by environmental signals. Using the EnvZ/OmpR system as an example, we constructed mathematical models to examine the steady-state and kinetic properties of the network. Mathematical modelling reveals that the TCS can show bistable behaviour for a given range of parameter values if unphosphorylated SK and RR form a dead-end complex that prevents SK autophosphorylation. Additionally, for bistability to exist the major dephosphorylation flux of the RR must not depend on the unphosphorylated SK. Structural modelling and published affinity studies suggest that the unphosphorylated SK EnvZ and the RR OmpR form a dead-end complex. However, bistability is not possible because the dephosphorylation of OmpR approximately P is mainly done by unphosphorylated EnvZ. The implications of this potential bistability in the design of the EnvZ/OmpR network and other TCS are discussed.

摘要

细菌双组分系统(TCS)是调节对环境变化的全局响应的关键信号转导网络。环境信号可能会调节传感激酶(SK)的磷酸化状态。磷酸化的SK将磷酸基团转移至其同源应答调节因子(RR),从而引发对该信号的生理反应。通常,SK具有双功能,在未磷酸化时,它也能够使RR去磷酸化。磷酸酶活性也可能受环境信号调节。以EnvZ/OmpR系统为例,我们构建了数学模型来研究该网络的稳态和动力学特性。数学建模表明,如果未磷酸化的SK和RR形成阻止SK自身磷酸化的终止复合物,那么在给定的参数值范围内,TCS可呈现双稳态行为。此外,为了存在双稳态,RR的主要去磷酸化通量不能依赖于未磷酸化的SK。结构建模和已发表的亲和力研究表明,未磷酸化的SK EnvZ和RR OmpR形成终止复合物。然而,由于OmpR-P的去磷酸化主要由未磷酸化的EnvZ完成,所以不可能出现双稳态。本文讨论了这种潜在双稳态在EnvZ/OmpR网络及其他TCS设计中的意义。

相似文献

1
Hysteretic and graded responses in bacterial two-component signal transduction.
Mol Microbiol. 2008 Jun;68(5):1196-215. doi: 10.1111/j.1365-2958.2008.06221.x. Epub 2008 Mar 19.
2
Involvement of EnvZ-OmpR two-component system in virulence control of Escherichia coli in Drosophila melanogaster.
Biochem Biophys Res Commun. 2013 Aug 23;438(2):306-11. doi: 10.1016/j.bbrc.2013.07.062. Epub 2013 Jul 22.
3
Interaction of EnvZ, a sensory histidine kinase, with phosphorylated OmpR, the cognate response regulator.
Mol Microbiol. 2002 Dec;46(5):1283-94. doi: 10.1046/j.1365-2958.2002.03240.x.
4
Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system.
Proc Natl Acad Sci U S A. 2003 Jan 21;100(2):691-6. doi: 10.1073/pnas.0234782100. Epub 2003 Jan 9.
6
Formation of the stoichiometric complex of EnvZ, a histidine kinase, with its response regulator, OmpR.
Mol Microbiol. 2002 Dec;46(5):1273-82. doi: 10.1046/j.1365-2958.2002.03239.x.
8
MzrA-EnvZ interactions in the periplasm influence the EnvZ/OmpR two-component regulon.
J Bacteriol. 2010 Dec;192(23):6271-8. doi: 10.1128/JB.00855-10. Epub 2010 Oct 1.
9
Kinetic buffering of cross talk between bacterial two-component sensors.
J Mol Biol. 2009 Jul 17;390(3):380-93. doi: 10.1016/j.jmb.2009.05.007. Epub 2009 May 13.

引用本文的文献

1
Spatiotemporal Patterning Enabled by Gene Regulatory Networks.
ACS Omega. 2023 Jan 17;8(4):3713-3725. doi: 10.1021/acsomega.2c04581. eCollection 2023 Jan 31.
2
Exploring the mono-/bistability range of positively autoregulated signaling systems in the presence of competing transcription factor binding sites.
PLoS Comput Biol. 2022 Nov 22;18(11):e1010738. doi: 10.1371/journal.pcbi.1010738. eCollection 2022 Nov.
3
A mathematical model for strigolactone biosynthesis in plants.
Front Plant Sci. 2022 Sep 2;13:979162. doi: 10.3389/fpls.2022.979162. eCollection 2022.
4
Real-time detection of response regulator phosphorylation dynamics in live bacteria.
Proc Natl Acad Sci U S A. 2022 Aug 30;119(35):e2201204119. doi: 10.1073/pnas.2201204119. Epub 2022 Aug 22.
5
Uncertainty propagation for deterministic models of biochemical networks using moment equations and the extended Kalman filter.
J R Soc Interface. 2021 Aug;18(181):20210331. doi: 10.1098/rsif.2021.0331. Epub 2021 Aug 4.
6
Maximization of information transmission influences selection of native phosphorelay architectures.
PeerJ. 2021 Jun 10;9:e11558. doi: 10.7717/peerj.11558. eCollection 2021.
7
The interplay of spatial organization and biochemistry in building blocks of cellular signalling pathways.
J R Soc Interface. 2020 May;17(166):20200251. doi: 10.1098/rsif.2020.0251. Epub 2020 May 27.
8
Phosphatase activity tunes two-component system sensor detection threshold.
Nat Commun. 2018 Apr 12;9(1):1433. doi: 10.1038/s41467-018-03929-y.
9
A Tug-of-War Mechanism for Pattern Formation in a Genetic Network.
ACS Synth Biol. 2017 Nov 17;6(11):2056-2066. doi: 10.1021/acssynbio.7b00077. Epub 2017 Aug 15.

本文引用的文献

1
Transient heterogeneity in extracellular protease production by Bacillus subtilis.
Mol Syst Biol. 2008;4:184. doi: 10.1038/msb.2008.18. Epub 2008 Apr 15.
2
Rational design of memory in eukaryotic cells.
Genes Dev. 2007 Sep 15;21(18):2271-6. doi: 10.1101/gad.1586107.
3
Noise in gene expression determines cell fate in Bacillus subtilis.
Science. 2007 Jul 27;317(5837):526-9. doi: 10.1126/science.1140818. Epub 2007 Jun 14.
4
Stimulus perception in bacterial signal-transducing histidine kinases.
Microbiol Mol Biol Rev. 2006 Dec;70(4):910-38. doi: 10.1128/MMBR.00020-06.
5
The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data.
Nucleic Acids Res. 2007 Jan;35(Database issue):D301-3. doi: 10.1093/nar/gkl971. Epub 2006 Nov 16.
6
Intramembrane-sensing histidine kinases: a new family of cell envelope stress sensors in Firmicutes bacteria.
FEMS Microbiol Lett. 2006 Nov;264(2):133-44. doi: 10.1111/j.1574-6968.2006.00444.x.
7
Evolution of sensory complexity recorded in a myxobacterial genome.
Proc Natl Acad Sci U S A. 2006 Oct 10;103(41):15200-5. doi: 10.1073/pnas.0607335103. Epub 2006 Oct 2.
8
Bistability in bacteria.
Mol Microbiol. 2006 Aug;61(3):564-72. doi: 10.1111/j.1365-2958.2006.05249.x.
10
A novel regulation on developmental gene expression of fruiting body formation in Myxobacteria.
Appl Microbiol Biotechnol. 2006 Aug;72(1):21-29. doi: 10.1007/s00253-006-0455-x. Epub 2006 Jun 22.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验