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广义混合模型的快速得分检验。

A fast score test for generalized mixture models.

机构信息

Department of Biostatistics, Epidemiology, and Informatics, The University of Pennsylvania, Philadelphia, Pennsylvania.

Department of Statistical Science, Cornell University, Ithaca, New York.

出版信息

Biometrics. 2020 Sep;76(3):811-820. doi: 10.1111/biom.13204. Epub 2019 Dec 31.

DOI:10.1111/biom.13204
PMID:31863595
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7424630/
Abstract

In biomedical studies, testing for homogeneity between two groups, where one group is modeled by mixture models, is often of great interest. This paper considers the semiparametric exponential family mixture model proposed by Hong et al. (2017) and studies the score test for homogeneity under this model. The score test is nonregular in the sense that nuisance parameters disappear under the null hypothesis. To address this difficulty, we propose a modification of the score test, so that the resulting test enjoys the Wilks phenomenon. In finite samples, we show that with fixed nuisance parameters the score test is locally most powerful. In large samples, we establish the asymptotic power functions under two types of local alternative hypotheses. Our simulation studies illustrate that the proposed score test is powerful and computationally fast. We apply the proposed score test to an UK ovarian cancer DNA methylation data for identification of differentially methylated CpG sites.

摘要

在生物医学研究中,检验两组之间的同质性是非常重要的,其中一组由混合模型建模。本文考虑了 Hong 等人(2017)提出的半参数指数族混合模型,并研究了该模型下的同质性得分检验。由于在零假设下,多余参数消失,因此得分检验是非正则的。为了解决这个困难,我们提出了对得分检验的一种修正,使得得到的检验具有 Wilks 现象。在有限样本中,我们表明,对于固定的多余参数,得分检验在局部上是最有效的。在大样本中,我们在两种局部备择假设下建立了渐近功效函数。我们的模拟研究表明,所提出的得分检验是强大和计算快速的。我们将所提出的得分检验应用于英国卵巢癌 DNA 甲基化数据,以识别差异甲基化 CpG 位点。

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2
Expression and prognostic significance of MYL9 in esophageal squamous cell carcinoma.MYL9在食管鳞状细胞癌中的表达及预后意义
PLoS One. 2017 Apr 7;12(4):e0175280. doi: 10.1371/journal.pone.0175280. eCollection 2017.
3
pETM: a penalized Exponential Tilt Model for analysis of correlated high-dimensional DNA methylation data.pETM:一种用于分析相关高维DNA甲基化数据的惩罚指数倾斜模型。
Bioinformatics. 2017 Jun 15;33(12):1765-1772. doi: 10.1093/bioinformatics/btx064.
4
Loss of KCNQ1 expression in stage II and stage III colon cancer is a strong prognostic factor for disease recurrence.在II期和III期结肠癌中,KCNQ1表达缺失是疾病复发的一个强有力的预后因素。
Br J Cancer. 2016 Dec 6;115(12):1565-1574. doi: 10.1038/bjc.2016.376. Epub 2016 Nov 17.
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MicroRNAs let7 expression in thyroid cancer: correlation with their deputed targets HMGA2 and SLC5A5.微小RNA let7在甲状腺癌中的表达:与其指定靶标HMGA2和SLC5A5的相关性
J Cancer Res Clin Oncol. 2016 Jun;142(6):1213-20. doi: 10.1007/s00432-016-2138-z. Epub 2016 Mar 9.
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