生长率对野生型、驯化型和 GH 转基因银大麻哈鱼免疫刺激转录组反应的影响。
Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon.
机构信息
Fisheries and Oceans Canada, 4160 Marine Drive, West Vancouver, BC, V7V 1N6, Canada.
Present Address: Korea Polar Research Institute, Unit of Polar Genomics, 26 Sondomirae-ro, Yeonsu-gu, Incheon, 21990, Republic of Korea.
出版信息
BMC Genomics. 2019 Dec 27;20(1):1024. doi: 10.1186/s12864-019-6408-4.
BACKGROUND
Transcriptomic responses to immune stimulation were investigated in coho salmon (Oncorhynchus kisutch) with distinct growth phenotypes. Wild-type fish were contrasted to strains with accelerated growth arising either from selective breeding (i.e. domestication) or genetic modification. Such distinct routes to accelerated growth may have unique implications for relationships and/or trade-offs between growth and immune function.
RESULTS
RNA-Seq was performed on liver and head kidney in four 'growth response groups' injected with polyinosinic-polycytidylic acid (Poly I:C; viral mimic), peptidoglycan (PGN; bacterial mimic) or PBS (control). These groups were: 1) 'W': wild-type, 2) 'TF': growth hormone (GH) transgenic salmon with ~ 3-fold higher growth-rate than W, 3) 'TR': GH transgenic fish ration restricted to possess a growth-rate equal to W, and 4) 'D': domesticated non-transgenic fish showing growth-rate intermediate to W and TF. D and TF showed a higher similarity in transcriptomic response compared to W and TR. Several immune genes showed constitutive expression differences among growth response groups, including perforin 1 and C-C motif chemokine 19-like. Among the affected immune pathways, most were up-regulated by Poly I:C and PGN. In response to PGN, the c-type lectin receptor signalling pathway responded uniquely in TF and TR. In response to stimulation with both immune mimics, TR responded more strongly than other groups. Further, group-specific pathway responses to PGN stimulation included NOD-like receptor signalling in W and platelet activation in TR. TF consistently showed the most attenuated immune response relative to W, and more DEGs were apparent in TR than TF and D relative to W, suggesting that a non-satiating ration coupled with elevated circulating GH levels may cause TR to possess enhanced immune capabilities. Alternatively, TF and D salmon are prevented from acquiring the same level of immune response as TR due to direction of energy to high overall somatic growth. Further study of the effects of ration restriction in growth-modified fishes is warranted.
CONCLUSIONS
These findings improve our understanding of the pleiotropic effects of growth modification on the immunological responses of fish, revealing unique immune pathway responses depending on the mechanism of growth acceleration and nutritional availability.
背景
本研究调查了具有不同生长表型的银大麻哈鱼(Oncorhynchus kisutch)对免疫刺激的转录组反应。野生型鱼与通过选择性繁殖(即驯化)或基因改造产生的生长加速的品系进行对比。这种不同的生长加速途径可能对生长和免疫功能之间的关系和/或权衡具有独特的影响。
结果
用聚肌苷酸-聚胞苷酸(Poly I:C;病毒模拟物)、肽聚糖(PGN;细菌模拟物)或磷酸盐缓冲盐水(PBS;对照)对四个“生长反应组”的肝脏和头肾进行 RNA-Seq 分析。这些组是:1)“W”:野生型,2)“TF”:生长激素(GH)转基因鲑鱼,比 W 型生长速度快约 3 倍,3)“TR”:GH 转基因鱼限制饮食以达到与 W 型生长速度相同,4)“D”:驯化的非转基因鱼,生长速度介于 W 和 TF 之间。D 和 TF 与 W 和 TR 相比,在转录组反应上具有更高的相似性。几种免疫基因在生长反应组之间表现出组成型表达差异,包括穿孔素 1 和 C-C 基序趋化因子 19 样。在受影响的免疫途径中,大多数途径受 Poly I:C 和 PGN 的上调。PGN 刺激时,C 型凝集素受体信号通路在 TF 和 TR 中特异性响应。对两种免疫模拟物的刺激均有反应时,TR 的反应强于其他组。此外,PGN 刺激时特定于组的途径反应包括 W 型的 NOD 样受体信号通路和 TR 型的血小板激活。TF 相对于 W 型表现出最明显的免疫反应减弱,并且与 W 型相比,TR 中明显的差异表达基因(DEGs)多于 TF 和 D,这表明非饱腹感饮食与循环 GH 水平升高相结合可能使 TR 具有增强的免疫能力。或者,TF 和 D 鲑鱼由于能量向整体躯体生长的方向转移而无法获得与 TR 相同水平的免疫反应。进一步研究生长修饰鱼类的限食效应是必要的。
结论
这些发现提高了我们对生长修饰对鱼类免疫反应的多效性影响的理解,揭示了依赖于生长加速机制和营养供应的独特免疫途径反应。
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