Departament de Química Inorgànica i Orgànica (Secció de Química Orgànica) & Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Pg. Lluís Companys 23, 08010 Barcelona, Spain.
Department of Chemistry, University of York, Heslington, York YO10 5DD, United Kingdom.
Curr Opin Struct Biol. 2020 Jun;62:79-92. doi: 10.1016/j.sbi.2019.11.008. Epub 2019 Dec 28.
Mannosidases are a diverse group of enzymes that are important in the biological processing of mannose-containing polysaccharides and complex glycoconjugates. They are found in 12 of the >160 sequence-based glycosidase families. We discuss evidence that nature has evolved a small set of common mechanisms that unite almost all of these mannosidase families. Broadly, mannosidases (and the closely related rhamnosidases) perform catalysis through just two conformations of the oxocarbenium ion-like transition state: a B (or enantiomeric B) boat and a H half-chair. This extends to a new family (GT108) of GDPMan-dependent β-1,2-mannosyltransferases/phosphorylases that perform mannosyl transfer through a boat conformation as well as some mannosidases that are metalloenzymes and require divalent cations for catalysis. Yet, among this commonality lies diversity. New evidence shows that one unique family (GH99) of mannosidases use an unusual mechanism involving anchimeric assistance via a 1,2-anhydro sugar (epoxide) intermediate.
甘露糖苷酶是一大类酶,在含有甘露糖的多糖和复合糖缀合物的生物加工中非常重要。它们存在于 160 多个基于序列的糖苷酶家族中的 12 个家族中。我们讨论了这样一种证据,即自然界已经进化出了一小套共同的机制,将几乎所有这些甘露糖苷酶家族联系在一起。广义上讲,甘露糖苷酶(和密切相关的鼠李糖苷酶)通过 oxocarbenium 离子样过渡态的两种构象进行催化:B(或对映体 B)船和 H 半椅。这扩展到了一个新的家族(GT108),即 GDPMan 依赖性β-1,2-甘露糖基转移酶/磷酸酶,它们通过船构象进行甘露糖基转移,以及一些需要二价阳离子进行催化的金属酶甘露糖苷酶。然而,在这种共性中存在多样性。新的证据表明,一个独特的甘露糖苷酶家族(GH99)使用一种涉及通过 1,2-脱水糖(环氧化物)中间体的准助催化剂的不寻常机制。