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基质辅助激光解吸电离飞行时间质谱法准确区分施氏葡萄球菌亚种。

Matrix-assisted laser desorption ionization-time of flight mass spectrometry-based method for accurate discrimination of Staphylococcus schleiferi subspecies.

机构信息

Universidade Federal Fluminense, Instituto Biomédico, Niterói, RJ (Rua Professor Hernani Melo No 101, São Domingos, Niterói, RJ, CEP: 24210-130, Brazil.

Universidade Federal Fluminense, Instituto Biomédico, Niterói, RJ (Rua Professor Hernani Melo No 101, São Domingos, Niterói, RJ, CEP: 24210-130, Brazil; Universidade Federal Do Rio De Janeiro, Instituto De Microbiologia Paulo De Góes, Rio De Janeiro, RJ (Av. Carlos Chagas Filho, 373, Bloco I, 2° Andar, CEP 21941-902, Brazil.

出版信息

Vet Microbiol. 2020 Jan;240:108472. doi: 10.1016/j.vetmic.2019.108472. Epub 2019 Oct 24.

Abstract

S. schleiferi is one of the main species isolated from canine otitis externa, pyoderma and from apparently healthy dogs. The species is divided into two subspecies, S. schleiferi schleiferi and S. schleiferi coagulans. MALDI-TOF MS does not distinguish correctly these two subspecies. This study aimed to identify biomarkers that could possibly discriminate Staphylococcus schleiferi subspecies by MALDI-TOF MS. Twelve strains (eight S. schleiferi schleiferi and four S. schleiferi coagulans) were firstly identified. Each isolate was submitted to a protein extraction protocol and subjected to spectrometry on Bruker Microflex LT mass spectrometer. Spectra were analyzed with the BioNumerics software v7.6. Our results showed that spectra clustered according to subspecies, and a set of five MALDI-TOF MS biomarkers were selected to enable the discrimination of S. schleiferi subspecies. In addition, these biomarkers were predicted to represent highly conserved proteins, which could contribute to the identification of subspecies-specific proteins that could be used for improved subspecies identification in clinical samples.

摘要

S. schleiferi 是从犬外耳炎、脓皮病和看似健康的犬中分离出来的主要物种之一。该物种分为两个亚种,即 S. schleiferi schleiferi 和 S. schleiferi coagulans。MALDI-TOF MS 无法正确区分这两个亚种。本研究旨在通过 MALDI-TOF MS 鉴定可能区分葡萄球菌亚种的生物标志物。首先鉴定了 12 株(8 株 S. schleiferi schleiferi 和 4 株 S. schleiferi coagulans)。每个分离株都经过蛋白质提取方案处理,并在 Bruker Microflex LT 质谱仪上进行光谱分析。使用 BioNumerics 软件 v7.6 对光谱进行分析。我们的结果表明,根据亚种对光谱进行聚类,选择了一组五个 MALDI-TOF MS 生物标志物来区分 S. schleiferi 亚种。此外,这些生物标志物被预测代表高度保守的蛋白质,这可能有助于鉴定亚种特异性蛋白质,可用于改善临床样本中的亚种鉴定。

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