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对来自深海细菌的新型GH39家族β-葡萄糖苷酶CmGH1的结构与功能洞察

Structural and Functional Insights Into CmGH1, a Novel GH39 Family β-Glucosidase From Deep-Sea Bacterium.

作者信息

Shen Yanfang, Li Zhengyang, Huo Ying-Yi, Bao Luyao, Gao Baocai, Xiao Peng, Hu Xiaojian, Xu Xue-Wei, Li Jixi

机构信息

State Key Laboratory of Genetic Engineering, Department of Neurology, School of Life Sciences, Huashan Hospital, Shanghai Engineering Research Center of Industrial Microorganisms, Fudan University, Shanghai, China.

Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou, China.

出版信息

Front Microbiol. 2019 Dec 20;10:2922. doi: 10.3389/fmicb.2019.02922. eCollection 2019.

DOI:10.3389/fmicb.2019.02922
PMID:31921083
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6933502/
Abstract

Glucosidases play key roles in many diseases and are limiting enzymes during cellulose degradation, which is an important part of global carbon cycle. Here, we identified a novel β-glucosidase, CmGH1, isolated from marine bacterium E4A9. In spite of its high sequence and structural similarity with β-xylosidase family members, CmGH1 had enzymatic activity toward -nitrophenyl-β-D-glucopyranoside (NPG) and cellobiose. The and values of CmGH1 toward NPG were 0.332 ± 0.038 mM and 2.15 ± 0.081 min, respectively. CmGH1 was tolerant to high concentration salts, detergents, as well as many kinds of organic solvents. The crystal structure of CmGH1 was resolved with a 1.8 Å resolution, which showed that CmGH1 was composed of a canonical (α/β)-barrel catalytic domain and an auxiliary β-sandwich domain. Although no canonical catalytic triad residues were found in CmGH1, structural comparison and mutagenesis analysis suggested that residues Gln157 and Tyr264 of CmGH1 were the active sites. Mutant Q157E significantly increased its hydrolase activity up to 15-fold, whereas Y264E totally abolished its enzymatic activity. These results might provide new insights into understanding the different catalytic mechanism during evolution for β-glucosidases and β-xylosidases.

摘要

葡糖苷酶在许多疾病中发挥关键作用,并且是纤维素降解过程中的限速酶,而纤维素降解是全球碳循环的重要组成部分。在此,我们鉴定了一种从海洋细菌E4A9中分离出的新型β-葡糖苷酶CmGH1。尽管CmGH1与β-木糖苷酶家族成员具有高度的序列和结构相似性,但它对对硝基苯基-β-D-吡喃葡萄糖苷(NPG)和纤维二糖具有酶活性。CmGH1对NPG的Km和kcat值分别为0.332±0.038 mM和2.15±0.081 min-1。CmGH1耐受高浓度盐、洗涤剂以及多种有机溶剂。CmGH1的晶体结构以1.8 Å的分辨率解析,结果表明CmGH1由一个典型的(α/β)-桶状催化结构域和一个辅助β-三明治结构域组成。尽管在CmGH1中未发现典型的催化三联体残基,但结构比较和诱变分析表明,CmGH1的Gln157和Tyr264残基是活性位点。突变体Q157E使其水解酶活性显著提高至15倍,而Y264E则完全消除了其酶活性。这些结果可能为理解β-葡糖苷酶和β-木糖苷酶在进化过程中的不同催化机制提供新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/6d6431d76837/fmicb-10-02922-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/24d01b45af8b/fmicb-10-02922-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/e506fc0aa0cc/fmicb-10-02922-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/cc7c192b422a/fmicb-10-02922-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/ad346f326f56/fmicb-10-02922-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/2d015500acdc/fmicb-10-02922-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/d1166bf1195d/fmicb-10-02922-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/6d6431d76837/fmicb-10-02922-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/24d01b45af8b/fmicb-10-02922-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/e506fc0aa0cc/fmicb-10-02922-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/cc7c192b422a/fmicb-10-02922-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/ad346f326f56/fmicb-10-02922-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/2d015500acdc/fmicb-10-02922-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/d1166bf1195d/fmicb-10-02922-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c06/6933502/6d6431d76837/fmicb-10-02922-g007.jpg

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