Kumakura Haruto, Motouchi Sei, Kobayashi Kaito, Inoue Miyu, Kariuda Natsuki, Nakai Hiroyuki, Nakajima Masahiro
Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda, Japan.
Artificial Intelligence Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan.
Protein Sci. 2025 Sep;34(9):e70255. doi: 10.1002/pro.70255.
β-Glucosidases, major enzymes that release glucose from various natural compounds, are phylogenetically classified into glycoside hydrolase (GH) families. GH1 is the largest of these families. No β-1,2-glucan-associated GH1 enzyme has been found, even though β-1,2-glucans are natural carbohydrates that are important for interaction between organisms and environmental adaptation. In this study, functional and structural analyses of a GH1 enzyme from Streptomyces griseus (SGR_2426 protein) were performed. SGR_2426 showed the highest hydrolytic activity toward p-nitrophenyl β-glucopyranoside among p-nitrophenyl sugars. This enzyme showed hydrolytic activity toward β-1,2-glucooligosaccharides specifically among β-linked glucooligosaccharides. A structure of the enzyme in complex with sophorose (β-1,2-glucodisaccharide) was obtained as a Michaelis complex. The six-membered ring of the glucose unit at the reducing end of sophorose is positioned in a hydrophobic environment between Trp291 and Met171, while only residue Gln229 forms a hydrogen bond directly. Trp291 and Gln229 are proposed as candidates for the residues important for substrate specificity based on comparison with structurally characterized GH1 homologs. Mutational analysis of Trp291 and Gln229 suggested that Trp291 is important for substrate recognition but not for substrate specificity and that Gln229 is involved in substrate specificity. SGR_2426 is the first identified β-1,2-glucan-associated β-glucosidase in the GH1 family.
β-葡萄糖苷酶是从各种天然化合物中释放葡萄糖的主要酶类,在系统发育上被分类为糖苷水解酶(GH)家族。GH1是这些家族中最大的一个。尽管β-1,2-葡聚糖是对生物体之间的相互作用和环境适应很重要的天然碳水化合物,但尚未发现与β-1,2-葡聚糖相关的GH1酶。在本研究中,对来自灰色链霉菌的一种GH1酶(SGR_2426蛋白)进行了功能和结构分析。SGR_2426对对硝基苯基糖中的对硝基苯基β-吡喃葡萄糖苷表现出最高的水解活性。该酶在β-连接的低聚葡萄糖中对β-1,2-低聚葡萄糖具有特异性水解活性。获得了该酶与槐糖(β-1,2-葡萄糖二糖)形成的复合物结构作为米氏复合物。槐糖还原端葡萄糖单元的六元环位于Trp291和Met171之间的疏水环境中,而只有Gln229残基直接形成氢键。基于与结构已表征的GH1同源物的比较,Trp291和Gln229被提议作为对底物特异性重要的残基的候选者。对Trp291和Gln229的突变分析表明,Trp291对底物识别很重要,但对底物特异性不重要,而Gln229参与底物特异性。SGR_2426是在GH1家族中首次鉴定出的与β-1,2-葡聚糖相关的β-葡萄糖苷酶。