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一种用于构建新型生物材料、生物医学和工业应用的人工串联 DNA、RNA 和蛋白质的载体酶促 DNA 片段扩增表达技术。

A vector-enzymatic DNA fragment amplification-expression technology for construction of artificial, concatemeric DNA, RNA and proteins for novel biomaterials, biomedical and industrial applications.

机构信息

Department of Molecular Biotechnology, Faculty of Chemistry, University of Gdansk, Gdansk 80-308, Poland; BioVentures Institute Ltd., Poznan 60-141, Poland.

Department of Molecular Biotechnology, Faculty of Chemistry, University of Gdansk, Gdansk 80-308, Poland; BioVentures Institute Ltd., Poznan 60-141, Poland.

出版信息

Mater Sci Eng C Mater Biol Appl. 2020 Mar;108:110426. doi: 10.1016/j.msec.2019.110426. Epub 2019 Nov 13.

Abstract

A DNA fragment amplification/expression technology for the production of new generation biomaterials for scientific, industrial and biomedical applications is described. The technology enables the formation of artificial Open Reading Frames (ORFs) encoding concatemeric RNAs and proteins. It recruits the Type IIS SapI restriction endonuclease (REase) for an assembling of DNA fragments in an ordered head-to-tail-orientation. The technology employs a vector-enzymatic system, dedicated to the expression of newly formed, concatemeric ORFs from strong promoters. Four vector series were constructed to suit specialised needs. As a proof of concept, a model amplification of a 7-amino acid (aa) epitope from the S protein of HBV virus was performed, resulting in 500 copies of the epitope-coding DNA segment, consecutively linked and expressed in Escherichia coli (E. coli). Furthermore, a peptide with potential pro-regenerative properties (derived from an angiopoietin-related growth factor) was designed. Its aa sequence was back-translated, codon usage optimized and synthesized as a continuous ORF 10-mer. The 10-mer was cloned into the amplification vector, enabling the N-terminal fusion and multiplication of the encoded protein with MalE signal sequence. The obtained genes were expressed, and the proteins were purified. Conclusively, we show that the proteins are neither cytotoxic nor immunogenic and they have a very low allergic potential.

摘要

描述了一种用于生产用于科学、工业和生物医学应用的新一代生物材料的 DNA 片段扩增/表达技术。该技术能够形成人工开放阅读框(ORF),编码串联 RNA 和蛋白质。它招募 Type IIS SapI 限制内切酶(REase)以有序的头到尾定向组装 DNA 片段。该技术采用了一种载体-酶系统,专门用于从强启动子表达新形成的串联 ORF。构建了四个载体系列以满足特殊需求。作为概念验证,对乙型肝炎病毒(HBV)表面蛋白的 7 个氨基酸(aa)表位进行了模型扩增,导致 500 个表位编码 DNA 片段连续连接并在大肠杆菌(E.coli)中表达。此外,设计了一种具有潜在促再生特性的肽(源自血管生成素相关生长因子)。其 aa 序列被反向翻译,密码子使用优化并合成连续的 10 个 aa 长的 ORF。10 个 aa 长的 ORF 被克隆到扩增载体中,使编码蛋白与 MalE 信号序列融合和倍增。获得的基因被表达,蛋白质被纯化。总之,我们表明这些蛋白质既无细胞毒性也无免疫原性,且过敏潜力非常低。

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