Skowron Piotr M, Krawczun Natalia, Żebrowska Joanna, Krefft Daria, Żołnierkiewicz Olga, Bielawa Marta, Jeżewska-Frąckowiak Joanna, Janus Łukasz, Witkowska Małgorzata, Palczewska Małgorzata, Zylicz-Stachula Agnieszka
Department of Molecular Biotechnology, Faculty of Chemistry, University of Gdansk, Gdansk 80-308, Poland.
BioVentures Institute Ltd., Poznan 60-141, Poland.
MethodsX. 2020 Sep 21;7:101070. doi: 10.1016/j.mex.2020.101070. eCollection 2020.
De novo designed bioactive molecules, such as DNA, RNA and peptides, are utilized in increasingly diverse scientific, industrial and biomedical applications. Concatemerization of designed DNA, RNA and peptides may improve their stability, bioactivity and allow for gradual release of the bioactive molecule at the intended destination. In this context, we developed a new method enabling the formation of DNA concatemers for the production of artificial, repetitive genes, encoding concatemeric RNAs and proteins of any nucleotide and amino-acid sequence. The technology recruits the Type IIS SapI restriction endonuclease (REase) for assembling DNA fragments in an ordered head-to-tail-orientation. Alternatively, other commercially available SapI isoschizomers can be used: LguI and thermostable BspQI. Four series of DNA vectors dedicated to the expression of newly formed, concatemeric open reading frames (ORFs), were designed and constructed to meet the technology needs. • Vector-enzymatic DNA fragment amplification technology. • Construction of DNA concatemers many times longer than those available with the use of current de novo gene synthesis methods. • Biosynthesis of protein tandem repeats with programmable function never seen in nature.
新设计的生物活性分子,如DNA、RNA和肽,正被用于越来越多样化的科学、工业和生物医学应用中。设计的DNA、RNA和肽的多联体化可以提高它们的稳定性、生物活性,并能使生物活性分子在预定目的地逐渐释放。在此背景下,我们开发了一种新方法,可用于形成DNA多联体,以生产人工重复基因,这些基因可编码任何核苷酸和氨基酸序列的多联体RNA和蛋白质。该技术利用IIS型SapI限制性内切酶(REase)以有序的头对尾方向组装DNA片段。另外,也可以使用其他市售的SapI同裂酶:LguI和耐热的BspQI。为满足该技术需求,设计并构建了四个系列的DNA载体,专门用于表达新形成的多联体开放阅读框(ORF)。
• 载体-酶促DNA片段扩增技术。
• 构建比目前从头合成基因方法所能得到的DNA多联体长得多的DNA多联体。
• 生物合成具有自然界从未见过的可编程功能的蛋白质串联重复序列。