New York Structural Biology Center, New York, NY 10027, United States.
Division of Infectious Diseases, Wadsworth Center, New York State Department of Health, Albany, NY, 12208, United States; Department of Biomedical Sciences, University at Albany, Albany, NY 12201, United States.
J Mol Biol. 2020 Feb 14;432(4):1109-1125. doi: 10.1016/j.jmb.2020.01.006. Epub 2020 Jan 10.
The extreme potency of the plant toxin, ricin, is due to its enzymatic subunit, RTA, which inactivates mammalian ribosomes with near-perfect efficiency. Here we characterized, at the functional and structural levels, seven alpaca single-domain antibodies (VHs) previously reported to recognize epitopes in proximity to RTA's active site. Three of the VHs, V2A11, V8E6, and V2G10, were potent inhibitors of RTA in vitro and protected Vero cells from ricin when expressed as intracellular antibodies ("intrabodies"). Crystal structure analysis revealed that the complementarity-determining region 3 (CDR3) elements of V2A11 and V8E6 penetrate RTA's active site and interact with key catalytic residues. V2G10, by contrast, sits atop the enzymatic pocket and occludes substrate accessibility. The other four VHs also penetrated/occluded RTA's active site, but lacked sufficient binding affinities to outcompete RTA-ribosome interactions. Intracellular delivery of high-affinity, single-domain antibodies may offer a new avenue in the development of countermeasures against ricin toxin.toxin, antibody, structure, intracellular.
植物毒素蓖麻毒素的极端效力归因于其酶亚基 RTA,它以近乎完美的效率使哺乳动物核糖体失活。在这里,我们在功能和结构水平上对先前报道的七种识别 RTA 活性位点附近表位的羊驼单域抗体(VH)进行了表征。三种 VH,V2A11、V8E6 和 V2G10,在体外对 RTA 具有很强的抑制作用,并在作为细胞内抗体(“intrabodies”)表达时保护 Vero 细胞免受蓖麻毒素的侵害。晶体结构分析表明,V2A11 和 V8E6 的互补决定区 3(CDR3)元件穿透 RTA 的活性位点并与关键催化残基相互作用。相比之下,V2G10 位于酶口袋的顶部并阻碍底物的可及性。其他四个 VH 也穿透/阻塞了 RTA 的活性位点,但缺乏足够的结合亲和力来取代 RTA-核糖体相互作用。高亲和力单域抗体的细胞内递送可能为开发针对蓖麻毒素的对策提供新途径。