Chen Guoqiao, Fan Xiaoxiao, Li Yirun, He Lifeng, Wang Shanjuan, Dai Yili, Bin Cui, Zhou Daizhan, Lin Hui
Department of General Surgery, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University , Hangzhou, China.
Biomedical Research Center, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University , Hangzhou, China.
Epigenetics. 2020 Jun-Jul;15(6-7):684-701. doi: 10.1080/15592294.2019.1709267. Epub 2020 Jan 14.
The aim of our study was to explore the relationship between the methylation status of the () gene and hepatocellular carcinoma (HCC). We combined our in-house data-set with the Cancer Genome Atlas (TCGA) data-set to screen and identify the methylation status and expression of adrenergic receptor (AR) genes in HCC. Immunohistochemistry and western blot were performed to assess the expression of ADRA1A in HCC cell lines and tissues. We further evaluated the methylation levels of the promoter region in 160 HCC patients using the Sequenom MassARRAY® platform and investigated the association between methylation of and clinical characteristics. The expression levels of ADRA1A mRNA and protein were significantly decreased in HCC tissues. Compared with that in paired normal tissues, the mean methylation level of the promoter region was significantly increased in tumour tissues from 160 HCC patients (25.2% vs. 17.0%, P < 0.0001). We found that a DNA methyltransferase inhibitor (decitabine) could increase the expression of mRNA in HCC cell lines. Moreover, hypermethylation of the gene in HCC samples was associated with clinical characteristics, including alcohol intake (P = 0.0097) and alpha-fetoprotein (P = 0.0411). Receiver operator characteristic (ROC) curve analysis demonstrated that the mean methylation levels of could discriminate between HCC tissues and adjacent non-cancerous tissues (AUC = 0.700, P < 0.0001). mRNA sequencing indicated that the main enriched pathways were pathways in cancer, cytokine-cytokine receptor interaction and metabolic pathways (P < 0.01). gene hypermethylation might contribute to HCC initiation and is a promising biomarker for the diagnosis of HCC.
我们研究的目的是探讨()基因的甲基化状态与肝细胞癌(HCC)之间的关系。我们将我们内部的数据集与癌症基因组图谱(TCGA)数据集相结合,以筛选和鉴定HCC中肾上腺素能受体(AR)基因的甲基化状态和表达。进行免疫组织化学和蛋白质印迹以评估ADRA1A在HCC细胞系和组织中的表达。我们使用Sequenom MassARRAY®平台进一步评估了160例HCC患者中启动子区域的甲基化水平,并研究了与临床特征之间的关联。HCC组织中ADRA1A mRNA和蛋白质的表达水平显著降低。与配对的正常组织相比,160例HCC患者肿瘤组织中启动子区域的平均甲基化水平显著升高(25.2%对17.0%,P<0.0001)。我们发现一种DNA甲基转移酶抑制剂(地西他滨)可以增加HCC细胞系中mRNA的表达。此外,HCC样本中基因的高甲基化与临床特征相关,包括饮酒(P=0.0097)和甲胎蛋白(P=0.0411)。受试者操作特征(ROC)曲线分析表明,的平均甲基化水平可区分HCC组织和相邻的非癌组织(AUC=0.700,P<0.0001)。mRNA测序表明主要富集的途径是癌症途径、细胞因子-细胞因子受体相互作用和代谢途径(P<0.01)。基因高甲基化可能有助于HCC的发生,是一种有前途的HCC诊断生物标志物。