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两种α,α,α,α-四碘苯基四甲基杯[4]吡咯异构体多晶型物的合成、X 射线结构表征和密度泛函理论(DFT)研究:卤键的重要性。

Synthesis, X-ray Characterization and Density Functional Theory (DFT) Studies of Two Polymorphs of the α,α,α,α, Isomer of Tetra--Iodophenyl Tetramethyl Calix[4]pyrrole: On the Importance of Halogen Bonds.

机构信息

Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology (BIST), Avinguda Països Catalans, 16, 43007 Tarragona, Spain.

Departament de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, carrer Marcel•li Domingo, 1, 43007 Tarragona, Spain.

出版信息

Molecules. 2020 Jan 10;25(2):285. doi: 10.3390/molecules25020285.

DOI:10.3390/molecules25020285
PMID:31936802
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7024273/
Abstract

This manuscript reports the improved synthesis of the α,α,α,α isomer of tetra--iodophenyl tetra-methyl calix[4]pyrrole and the X-ray characterization of two solvate polymorphs. In the solid state, the calix[4]pyrrole receptor adopts the cone conformation, including one acetonitrile molecule in its aromatic cavity by establishing four convergent hydrogen bonds between its nitrogen atom and the four pyrrole NHs of the former. The inclusion complexes pack into rods, displaying a unidirectional orientation. In turn, the rods form flat 2D-layers by alternating the orientation of their -iodo substituents. The 2D layers stack on top of another, resulting in a head-to-head and tail-to-tail orientation of the complexes or their exclusive arrangement in a head-to-tail geometry. The dissimilar stacking of the layers yields two solvate polymorphs that are simultaneously present in the structures of the single crystals. The ratio of the two polymorph phases is regulated by the amount of acetonitrile added to the chloroform solutions from which the crystals grow. Halogen bonding interactions are highly relevant in the crystal lattices of the two polymorphs. We analyzed and characterized these interactions by means of density functional theory (DFT) calculations and several computational tools. Remarkably, single crystals of a solvate containing two acetonitrile molecules per calix[4]pyrrole were obtained from pure acetonitrile solution.

摘要

本文报道了α,α,α,α-四碘四甲基杯[4]吡咯的改进合成及两种溶剂化物多晶型体的 X 射线表征。在固态下,杯[4]吡咯受体采用锥形构象,通过其氮原子与前体四个吡咯 NH 之间的四个收敛氢键,在其芳环空腔中包含一个乙腈分子。包含复合物组装成棒状,呈现单向取向。反过来,棒状通过交替其碘取代基的取向形成平坦的二维层。二维层堆叠在另一个之上,导致复合物以头对头和尾对尾的取向或以头对尾的排他性排列堆积。层的不同堆积产生了两种溶剂化物多晶型体,它们同时存在于单晶的结构中。两种多晶型相的比例由添加到生长晶体的氯仿溶液中的乙腈量来调节。卤键相互作用在两种多晶型体的晶格中非常重要。我们通过密度泛函理论(DFT)计算和几种计算工具对这些相互作用进行了分析和表征。值得注意的是,从纯乙腈溶液中获得了每个杯[4]吡咯含有两个乙腈分子的溶剂化物单晶。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/7ac64b55019a/molecules-25-00285-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/f5dbf6cab4f7/molecules-25-00285-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/eb23be5976dd/molecules-25-00285-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/c84c4396387c/molecules-25-00285-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/66e4bb32f6e5/molecules-25-00285-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/2e3b7c741544/molecules-25-00285-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/462e17ce859d/molecules-25-00285-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/02976b0e0f34/molecules-25-00285-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/7d62b713c723/molecules-25-00285-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/7ac64b55019a/molecules-25-00285-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/f5dbf6cab4f7/molecules-25-00285-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/eb23be5976dd/molecules-25-00285-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/c84c4396387c/molecules-25-00285-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/66e4bb32f6e5/molecules-25-00285-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/2e3b7c741544/molecules-25-00285-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/462e17ce859d/molecules-25-00285-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/02976b0e0f34/molecules-25-00285-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/7d62b713c723/molecules-25-00285-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac71/7024273/7ac64b55019a/molecules-25-00285-g008.jpg

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