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细胞内事件时间控制策略。

Control strategies for the timing of intracellular events.

机构信息

Key Laboratory of Computational Mathematics, Guangdong Province, School of Mathematics, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China.

出版信息

Phys Rev E. 2019 Dec;100(6-1):062401. doi: 10.1103/PhysRevE.100.062401.

Abstract

While the timing of intracellular events is essential for many cellular processes, gene expression inside a single cell can exhibit substantial cell-to-cell variability, raising the question of how cells ensure precision in event timing despite such stochasticity. We address this question by analyzing a biologically reasonable model of gene expression in the context of first passage time (FPT), focusing on two experimentally measurable statistics: mean FPT (MFPT) and timing variability (TV). We show that (1) transcriptional burst size (BS) and burst frequency (BF) can minimize the TV; (2) translational BS monotonically reduces the MFPT to a nonzero low bound; (3) the timescale of promoter kinetics can minimize both the MFPT and the TV, depending on the ratio of the on-switching rate over the off-switching rate; and (4) positive feedback regulation of any form can all minimize the TV, whereas negative feedback regulation of transcriptional BF or BS always enhances the TV. These control strategies can have broad implications for diverse cellular processes relying on precise temporal triggering of events.

摘要

虽然细胞内事件的时间对于许多细胞过程至关重要,但单个细胞内的基因表达会表现出显著的细胞间变异性,这就提出了一个问题,即在存在这种随机性的情况下,细胞如何确保事件时间的精确性。我们通过分析在第一通过时间 (FPT) 背景下的基因表达的合理生物学模型来解决这个问题,重点关注两个可实验测量的统计数据:平均第一通过时间 (MFPT) 和定时变异性 (TV)。我们表明:(1)转录爆发大小 (BS) 和爆发频率 (BF) 可以最小化 TV;(2)翻译 BS 单调地将 MFPT 降低到非零的低边界;(3)启动子动力学的时间尺度可以最小化 MFPT 和 TV,这取决于开/关转换率的比值;(4)任何形式的正反馈调节都可以最小化 TV,而转录 BF 或 BS 的负反馈调节总是会增加 TV。这些控制策略可能对依赖于事件精确时间触发的各种细胞过程产生广泛影响。

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Control strategies for the timing of intracellular events.细胞内事件时间控制策略。
Phys Rev E. 2019 Dec;100(6-1):062401. doi: 10.1103/PhysRevE.100.062401.
2

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