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全原子模拟揭示细胞色素还原酶如何重塑其伙伴细胞色素P450酶的底物进出途径。

All-Atom Simulations Disclose How Cytochrome Reductase Reshapes the Substrate Access/Egress Routes of Its Partner CYP450s.

作者信息

Ritacco Ida, Saltalamacchia Andrea, Spinello Angelo, Ippoliti Emiliano, Magistrato Alessandra

机构信息

CNR-IOM c/o SISSA , via Bonomea 265 , 34136 Trieste , Italy.

International School for Advanced Studies , via Bonomea 265 , 34136 Trieste , Italy.

出版信息

J Phys Chem Lett. 2020 Feb 20;11(4):1189-1193. doi: 10.1021/acs.jpclett.9b03798. Epub 2020 Jan 29.

DOI:10.1021/acs.jpclett.9b03798
PMID:31986051
Abstract

Cytochromes P450 enzymes (CYP450s) promote the oxidative metabolism of a variety of substrates via the electrons supplied by the cytochrome P450 reductase (CPR) and upon formation of a CPR/CYP450 adduct. In spite of the pivotal regulatory importance of this process, the impact of CPR binding on the functional properties of its partner CYP450 remains elusive. By performing multiple microsecond-long all-atom molecular dynamics simulations of a 520 000-atom model of a CPR/CYP450 adduct embedded in a membrane mimic, we disclose the molecular terms for their interactions, considering the aromatase (HA) enzyme as a proxy of the CYP450 family. Our study strikingly unveils that CPR binding alters HA's functional motions, bolstering a change in the shape and type of the channels traveled by substrates/products during their access/egress to/from the enzyme's active site. Our outcomes unprecedentedly contribute to extricate the many entangled facets of the CYP450 metabolon, redrafting its intricate panorama from an atomic-level perspective.

摘要

细胞色素P450酶(CYP450s)通过细胞色素P450还原酶(CPR)提供的电子,并在形成CPR/CYP450加合物后,促进多种底物的氧化代谢。尽管这一过程具有关键的调节重要性,但CPR结合对其伙伴CYP450功能特性的影响仍不清楚。通过对嵌入膜模拟物中的CPR/CYP450加合物的520000原子模型进行多次微秒级的全原子分子动力学模拟,我们以芳香化酶(HA)作为CYP450家族的代表,揭示了它们相互作用的分子机制。我们的研究惊人地发现,CPR结合改变了HA的功能运动,支持底物/产物在进出酶活性位点过程中所经过通道的形状和类型发生变化。我们的研究结果前所未有地有助于理清CYP450代谢体的诸多复杂方面,从原子层面重新勾勒其错综复杂的全貌。

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