College of Horticulture, Shenyang Agricultural University, Shenyang, 110161, China.
College of Forestry, Shenyang Agricultural University, Shenyang, 110161, China.
Theor Appl Genet. 2020 Apr;133(4):1303-1312. doi: 10.1007/s00122-020-03551-x. Epub 2020 Jan 30.
BoFL, a candidate gene conferring the feathered-leaved trait in ornamental kale, is located in a 374.532-kb region on chromosome C9. Leaf shape is an important economic trait in ornamental kale (Brassica oleracea var. acephala). Identifying the genes that influence leaf shape would provide insight into the mechanism underlying leaf development. In this study, we constructed F, F, BCP, BCP, and F populations from a cross between a feathered-leaved inbred line, F0819, and a smooth-leaved inbred line, S0835, of ornamental kale. Genetic analysis showed that the feathered-leaved trait was controlled by a semi-dominant gene, BoFL. Using bulked segregant analysis sequencing, we mapped the BoFL gene to a 4.17-Mb interval on chromosome C9. Next, we narrowed down the candidate region to 374.532-kb by fine-scale mapping between the two flanking markers INDEL940 and INDEL5443. We identified 38 genes in the candidate region, among which only Bo9g184610 showed significant variation in expression level between the two parental lines. Sequencing of the gene in the parental lines identified three single-nucleotide polymorphism (SNP) differences, containing two nonsynonymous and one synonymous SNPs, which resulted in coding variations of an aspartate and a phenylalanine residue in F0819, but an alanine and a leucine residue in S0835. A cleaved amplified polymorphic sequence (CAPS) marker, CAPS4610, corresponding to the first nonsynonymous SNP co-segregated with the leaf shape trait. We thus speculated that the gene conferring the feathered-leaved trait is BoALG10, a homolog of ALG10, which encodes an alpha-1,2-glucosyltransferase in Arabidopsis thaliana. This work will be useful for understanding the mechanism of leaf development and provides important information for the breeding of kale with novel leaf shapes.
BoFL,一个赋予羽叶观赏甘蓝叶形特征的候选基因,位于甘蓝 C9 染色体上的 374.532kb 区域。叶形是观赏甘蓝( Brassica oleracea var. acephala )的一个重要经济性状。鉴定影响叶形的基因将有助于深入了解叶片发育的机制。在这项研究中,我们构建了 F 、 F 、 BCP 、 BCP 和 F 群体,来自一个羽叶自交系 F0819 和一个光滑叶自交系 S0835 的杂交。遗传分析表明,羽叶性状受一个半显性基因 BoFL 控制。利用混池分离分析测序,我们将 BoFL 基因定位到甘蓝 C9 染色体上的一个 4.17Mb 区间。接下来,我们通过两个侧翼标记 INDEL940 和 INDEL5443 之间的精细作图,将候选区域缩小到 374.532kb。我们在候选区域中鉴定了 38 个基因,其中只有 Bo9g184610 在两个亲本系之间的表达水平有显著差异。对亲本系中基因的测序鉴定了三个单核苷酸多态性(SNP)差异,包含两个非同义 SNP 和一个同义 SNP,导致 F0819 中的一个天冬氨酸和一个苯丙氨酸残基发生变异,但 S0835 中的一个丙氨酸和一个亮氨酸残基发生变异。与叶形性状共分离的一个第一个非同义 SNP 对应的 CAPS 标记 CAPS4610。因此,我们推测赋予羽叶特征的基因是 BoALG10 ,它是拟南芥 ALG10 的同源物,编码一个α-1,2-葡萄糖基转移酶。这项工作将有助于理解叶片发育的机制,并为培育具有新型叶形的甘蓝提供重要信息。