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青少年和青年胆管癌患者的基因组特征与临床特征

Genomic Features and Clinical Characteristics of Adolescents and Young Adults With Cholangiocarcinoma.

作者信息

Feng Hao, Tong Huan, Yan Jiayan, He Min, Chen Wei, Wang Jian

机构信息

Department of Biliary-Pancreatic Surgery, School of Medicine, Renji Hospital, Shanghai Jiao Tong University, Shanghai, China.

University Hospital of LMU Munich, Medical Faculty of Ludwig-Maximilians-University of Munich, Munich, Germany.

出版信息

Front Oncol. 2020 Jan 14;9:1439. doi: 10.3389/fonc.2019.01439. eCollection 2019.

Abstract

Adolescents and young adults (AYAs) diagnosed with cancer between ages 15 and 45 years may exhibit unique biologic and genomic characteristics as well as clinical features, resulting in differences in clinical characters and drug resistance. However, compared to other solid cancers, relatively few studies have been conducted in this age group in cholangiocarcinoma (CCA). This study is performed to investigate the clinical and molecular features of AYAs with CCA. Three cohorts, including the external dataset (TCGA and MSKCC) and the perihilar CCA databank of Chinese tertiary hospitals, were contained in this study. Pathway and process enrichment analysis had been carried out with the following ontology sources: KEGG Pathway, GO Biological Processes, Reactome Gene Sets, Canonical Pathways, and CORUM. Metascape and GEPIA datasets were used for bioinformatic analysis. < 0.05 was considered statistically significant. All statistical analyses were performed with GraphPad Prism (version 7.0; GraphPad Software, La Jolla, California) and R studio (version 3.6.1; R studio, Boston, Massachusetts). Compared to older adults, AYAs with CCA presented with worse overall survival, although the difference was not significant. Specific to patients with stage IV CCAs who underwent chemotherapy, AYAs were associated with significantly poorer overall survival (OS) ( = 0.03, hazards ratio (HR) 3.01, 95% confidence interval (CI) 1.14-4.91). From the anatomical perspective, more extrahepatic CCA was detected in the AYA group. Microsatellite instability (MSI) occurred in 3% of older patients in the present study. Nevertheless, none of the AYAs had MSI status. In this study, AYAs gained an enhanced frequency of additional sex combs like 1 (ASXL1) ( = 0.02) and KMT2C ( = 0.02) mutation than their older counterparts. Besides ASXL1 and KMT2C, the genes enriched in AYAs with CCA were analyzed by pathway and process enrichment analysis. And those genes were found to be associated with poorer differentiation, deubiquitination, and WNT signal pathway. Moreover, AYAs were relevant to poor differentiation and advanced tumor stage. This study offered a preliminary landscape of the clinical and molecular features of early-onset biliary cancers. Further studies including more samples are essential to investigate whether ASXL1 and KMT2C could be considered as potentially targetable genomic signatures for young patients.

摘要

15至45岁被诊断患有癌症的青少年和青年(AYA)可能表现出独特的生物学和基因组特征以及临床特征,从而导致临床特征和耐药性的差异。然而,与其他实体癌相比,针对该年龄组胆管癌(CCA)的研究相对较少。本研究旨在调查AYA-CCA患者的临床和分子特征。本研究纳入了三个队列,包括外部数据集(TCGA和MSKCC)以及中国三级医院的肝门周围CCA数据库。使用以下本体来源进行了通路和过程富集分析:KEGG通路、GO生物学过程、Reactome基因集、经典通路和CORUM。使用Metascape和GEPIA数据集进行生物信息学分析。P < 0.05被认为具有统计学意义。所有统计分析均使用GraphPad Prism(7.0版;GraphPad软件公司,加利福尼亚州拉霍亚)和R studio(3.6.1版;R studio,马萨诸塞州波士顿)进行。与老年患者相比,AYA-CCA患者的总生存期较差,尽管差异不显著。对于接受化疗的IV期CCA患者,AYA患者的总生存期(OS)显著较差(P = 0.03,风险比(HR)3.01,95%置信区间(CI)1.14 - 4.91)。从解剖学角度来看,AYA组中检测到更多的肝外CCA。在本研究中,3%的老年患者发生微卫星不稳定性(MSI)。然而,没有AYA患者具有MSI状态。在本研究中,AYA患者中额外性梳状蛋白1(ASXL1)(P = 0.02)和赖氨酸甲基转移酶2C(KMT2C)(P = 0.02)突变的频率高于老年患者。除了ASXL1和KMT2C之外,通过通路和过程富集分析对AYA-CCA患者中富集的基因进行了分析。发现这些基因与较差的分化、去泛素化和WNT信号通路相关。此外,AYA与较差的分化和晚期肿瘤分期相关。本研究提供了早发性胆管癌临床和分子特征的初步概况。包括更多样本的进一步研究对于调查ASXL1和KMT2C是否可被视为年轻患者潜在的可靶向基因组特征至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40b1/6971196/b483e8e39f61/fonc-09-01439-g0001.jpg

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