Institute of Pharmacology and Experimental Toxicology, Faculty of Medicine, University of Ljubljana, Korytkova 2, SI-1104 Ljubljana, Slovenia.
Laboratory for Computational Biochemistry and Drug Design, National Institute of Chemistry, Hajdrihova 19, SI-1001 Ljubljana, Slovenia.
Biomolecules. 2020 Jan 29;10(2):196. doi: 10.3390/biom10020196.
We used a combination of density functional theory (DFT) calculations and the implicit quantization of the acidic N-H and O-H bonds to assess the effect of deuteration on the binding of agonists (2-methylhistamine and 4-methylhistamine) and antagonists (cimetidine and famotidine) to the histamine H2 receptor. The results show that deuteration significantly increases the affinity for 4-methylhistamine and reduces it for 2-methylhistamine, while leaving it unchanged for both antagonists, which is found in excellent agreement with experiments. The revealed trends are interpreted in the light of the altered strength of the hydrogen bonding upon deuteration, known as the Ubbelohde effect, which affects ligand interactions with both active sites residues and solvent molecules preceding the binding, thus providing strong evidence for the relevance of hydrogen bonding for this process. In addition, computations further underline an important role of the Tyr250 residue for the binding. The obtained insight is relevant for the therapy in the context of (per)deuterated drugs that are expected to enter therapeutic practice in the near future, while this approach may contribute towards understanding receptor activation and its discrimination between agonists and antagonists.
我们使用密度泛函理论 (DFT) 计算和酸性 N-H 和 O-H 键的隐含量子化相结合,评估氘代对激动剂(2-甲基组氨酸和 4-甲基组氨酸)和拮抗剂(西咪替丁和法莫替丁)与组胺 H2 受体结合的影响。结果表明,氘代显著增加了 4-甲基组氨酸的亲和力,降低了 2-甲基组氨酸的亲和力,而对两种拮抗剂则保持不变,这与实验结果非常吻合。所揭示的趋势根据氘代引起的氢键强度变化(称为乌贝娄德效应)进行解释,该效应影响配体与活性位点残基和结合前溶剂分子的相互作用,从而为氢键对该过程的相关性提供了有力证据。此外,计算进一步强调了 Tyr250 残基在结合中的重要作用。在不久的将来有望进入治疗实践的(全)氘代药物的治疗背景下,获得的见解是相关的,而这种方法可能有助于理解受体的激活及其对激动剂和拮抗剂的区分。