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与物种组抗干燥能力差异相关的组成型和塑性基因表达变化。

Constitutive and Plastic Gene Expression Variation Associated with Desiccation Resistance Differences in the Species Group.

机构信息

Department of Biology, Indiana University, Bloomington, IN 47405, USA.

出版信息

Genes (Basel). 2020 Jan 30;11(2):146. doi: 10.3390/genes11020146.

Abstract

Stress response mechanisms are ubiquitous and important for adaptation to heterogenous environments and could be based on constitutive or plastic responses to environmental stressors. Here we quantify constitutive and plastic gene expression differences under ambient and desiccation stress treatments, in males and females of three species of known to differ in desiccation resistance. survives desiccation trials significantly longer than the two subspecies of , consistent with its natural species range in the desert southwest USA. We found that desiccation stress reduces global expression differences between species-likely because many general stress response mechanisms are shared among species-but that all species showed plastic expression changes at hundreds of loci during desiccation. Nonetheless, had the fewest genes with significant plastic expression changes, despite having the highest desiccation resistance. Of the genes that were significantly differentially expressed between species-either within each treatment (>200 loci), constitutively regardless of treatment (36 loci), or with different species-specific plasticity (26 loci)-GO analysis did not find significant enrichment of any major gene pathways or broader functions associated with desiccation stress. Taken together, these data indicate that if gene expression changes contribute to differential desiccation resistance between species, these differences are likely shaped by a relatively small set of influential genes rather than broad genome-wide differentiation in stress response mechanisms. Finally, among the set of genes with the greatest between-species plasticity, we identified an interesting set of immune-response genes with consistent but opposing reaction norms between sexes, whose potential functional role in sex-specific mechanisms of desiccation resistance remains to be determined.

摘要

应激反应机制普遍存在,对于适应异质环境非常重要,它可以基于对环境胁迫的组成型或塑性反应。在这里,我们量化了三种已知在抗干燥能力上存在差异的物种的雄性和雌性在环境和干燥胁迫处理下组成型和塑性基因表达的差异。与两种 亚种相比, 在干燥试验中存活时间明显更长,这与其在美国西南部沙漠中的自然物种范围一致。我们发现,干燥胁迫减少了物种间的整体表达差异,可能是因为许多一般的应激反应机制在物种间共享,但所有物种在干燥过程中都表现出数百个位点的塑性表达变化。尽管 具有最高的抗干燥能力,但它的基因具有显著塑性表达变化的数量最少。在物种间存在显著差异表达的基因中——无论是在每个处理中(>200 个位点)、无论处理如何都表现出组成型差异(36 个位点),还是表现出不同的物种特异性塑性(26 个位点)——GO 分析没有发现与干燥胁迫相关的任何主要基因途径或更广泛的功能显著富集。总的来说,这些数据表明,如果基因表达变化有助于物种间的抗干燥能力差异,那么这些差异可能是由相对较少的有影响力的基因而不是广泛的应激反应机制的全基因组分化所塑造的。最后,在具有最大物种间塑性的基因集中,我们确定了一组有趣的免疫反应基因,它们在性别之间具有一致但相反的反应规律,其在性别特异性抗干燥机制中的潜在功能作用仍有待确定。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/00b1/7073762/8395df798a08/genes-11-00146-g001.jpg

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