宇久岛变种和遗传霉素（G418）的全基因组测序数据。
Whole genome sequencing data of var. Ukushima and G418.
作者信息
Ogiso-Tanaka Eri, Chankaew Sompong, Isemura Takehisa, Kongjaimun Alisa, Baba Akiko, Naito Ken, Kaga Akito, Tomooka Norihiko
机构信息
Genetic Resources Center, National Institute of Agrobiological Sciences (NIAS), 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
Program in Plant Breeding, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Kamphaeng Saen, Nakhon Pathom 73140, Thailand.
出版信息
Data Brief. 2020 Jan 14;29:105131. doi: 10.1016/j.dib.2020.105131. eCollection 2020 Apr.
is one of the closely related species of (Adzuki bean). Two strain of 'Ukushima' and 'G418' were identified as salt tolerance strains in from gene bank collection. F populations from an inter- or intra-specific cross between the sensitive and tolerant strains are useful for the detection of salt tolerance QTL in . Although reference genome is available and useful for genetic analysis by genotyping-by-sequencing/RADseq in closely related species, it is not enough for isolation of responsible genes. To reveal sequence variation in "Ukushima" and "G418", the whole genome sequencing was performed using Illumina HiSeq X Ten system (411,174,986 and 478,116,282 read). NGS data was deposited in the DNA Data Bank of Japan (DDBJ) under accession number DRA009307.
是（小豆）密切相关的物种之一。从基因库收集的材料中鉴定出“宇都岛”和“G418”两个菌株为耐盐菌株。敏感和耐盐菌株之间种间或种内杂交产生的F群体可用于检测小豆的耐盐QTL。虽然有小豆参考基因组，且对密切相关物种通过测序基因分型/ RADseq进行遗传分析很有用，但对于分离相关基因还不够。为了揭示小豆“宇都岛”和“G418”的序列变异，使用Illumina HiSeq X Ten系统进行了全基因组测序（分别有411,174,986和478,116,282条 reads）。NGS数据已存入日本DNA数据库（DDBJ），登录号为DRA009307。
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