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小豆(Vigna angularis)的染色体基因组组装与注释

Chromosome genome assembly and annotation of Adzuki Bean (Vigna angularis).

作者信息

Li Wan, He Fanglei, Wang Xueyang, Liu Qi, Zhang Xiaoqing, Yang Zhiquan, Fang Chao, Xiang Hongtao

机构信息

Institute of Crop Cultivation and Tillage, Heilongjiang Academy of Agricultural Sciences, Harbin, 150086, China.

Heilongjiang Academy of Agricultural Sciences, Harbin, 150086, China.

出版信息

Sci Data. 2024 Oct 2;11(1):1074. doi: 10.1038/s41597-024-03911-y.

Abstract

Adzuki bean (Vigna angularis) is a significant dietary legume crop that is prevalent in East Asia. It also holds traditional medicinal importance in China. In this study, we report a high-quality, chromosome-level genome assembly of adzuki bean obtained by employing Illumina short-read sequencing, PacBio long-read sequencing, and Hi-C technology. The assembly spans 447.8 Mb, encompassing 96.32% of the estimated genome, with contig and scaffold N50 values of 16.5 and 41.0 Mb, respectively. More than 98.2% of the 1,614 BUSCO genes were fully identified, and 25,939 genes were annotated, with 98.23% of them being functionally identifiable. Vigna angularis was estimated to diverge successively from Vigna unguiculata and Vigna radiata about 15.3 and 8.7 million years ago (Ma), respectively. This chromosome-level reference genome of Vigna angularis provides a robust foundation for exploring the functional genomics and genome evolution of adzuki bean, thereby facilitating advancements in molecular breeding of adzuki bean.

摘要

小豆(Vigna angularis)是一种重要的食用豆类作物,在东亚地区广泛种植。它在中国也具有传统药用价值。在本研究中,我们报告了通过使用Illumina短读长测序、PacBio长读长测序和Hi-C技术获得的高质量、染色体水平的小豆基因组组装。该组装序列跨度为447.8 Mb,覆盖了估计基因组的96.32%,重叠群(contig)和支架(scaffold)的N50值分别为16.5 Mb和41.0 Mb。在1614个BUSCO基因中,超过98.2%被完全鉴定出来,共注释了25939个基因,其中98.23%在功能上可识别。据估计,小豆分别在约1530万年前和870万年前与豇豆(Vigna unguiculata)和绿豆(Vigna radiata)相继分化。这种染色体水平的小豆参考基因组为探索小豆的功能基因组学和基因组进化提供了坚实基础,从而推动小豆分子育种的发展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8507/11446921/1a45cdf06544/41597_2024_3911_Fig1_HTML.jpg

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