Sterner Beckett, Witteveen Joeri, Franz Nico
School of Life Sciences, Arizona State University, Tempe, USA.
Department of Science Education, Section for History and Philosophy of Science, University of Copenhagen, Copenhagen, Denmark.
Hist Philos Life Sci. 2020 Feb 6;42(1):8. doi: 10.1007/s40656-020-0300-z.
The collection and classification of data into meaningful categories is a key step in the process of knowledge making. In the life sciences, the design of data discovery and integration tools has relied on the premise that a formal classificatory system for expressing a body of data should be grounded in consensus definitions for classifications. On this approach, exemplified by the realist program of the Open Biomedical Ontologies Foundry, progress is maximized by grounding the representation and aggregation of data on settled knowledge. We argue that historical practices in systematic biology provide an important and overlooked alternative approach to classifying and disseminating data, based on a principle of coordinative rather than definitional consensus. Systematists have developed a robust system for referring to taxonomic entities that can deliver high quality data discovery and integration without invoking consensus about reality or "settled" science.
将数据收集并分类到有意义的类别中是知识形成过程中的关键一步。在生命科学领域,数据发现与整合工具的设计依赖于这样一个前提,即用于表达数据集的正式分类系统应以分类的共识定义为基础。以开放生物医学本体铸造厂的实在论计划为例,通过将数据的表示和聚合建立在既定知识之上,可使进展最大化。我们认为,系统生物学中的历史实践提供了一种重要且被忽视的对数据进行分类和传播的替代方法,该方法基于协调而非定义性共识的原则。分类学家已经开发出一种强大的系统,用于指代分类实体,该系统无需就现实或“既定”科学达成共识,就能实现高质量的数据发现与整合。