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全球相互作用组

The global interactome.

作者信息

Cook Katherine V, Li Chuang, Cai Haiyuan, Krumholz Lee R, Hambright K David, Paerl Hans W, Steffen Morgan M, Wilson Alan E, Burford Michele A, Grossart Hans-Peter, Hamilton David P, Jiang Helong, Sukenik Assaf, Latour Delphine, Meyer Elisabeth I, Padisák Judit, Qin Boqiang, Zamor Richard M, Zhu Guangwei

机构信息

Plankton Ecology and Limnology Laboratory, Department of Biology The University of Oklahoma Norman Oklahoma.

Program in Ecology and Evolutionary Biology and the Geographical Ecology Group, Department of Biology The University of Oklahoma Norman Oklahoma.

出版信息

Limnol Oceanogr. 2020 Jan;65(Suppl 1):S194-S207. doi: 10.1002/lno.11361. Epub 2019 Nov 19.

Abstract

Bacteria play key roles in the function and diversity of aquatic systems, but aside from study of specific bloom systems, little is known about the diversity or biogeography of bacteria associated with harmful cyanobacterial blooms (cyanoHABs). CyanoHAB species are known to shape bacterial community composition and to rely on functions provided by the associated bacteria, leading to the hypothesized cyanoHAB interactome, a coevolved community of synergistic and interacting bacteria species, each necessary for the success of the others. Here, we surveyed the microbiome associated with during blooms in 12 lakes spanning four continents as an initial test of the hypothesized interactome. We predicted that microbiome composition and functional potential would be similar across blooms globally. Our results, as revealed by 16S rRNA sequence similarity, indicate that is cosmopolitan in lakes across a 280° longitudinal and 90° latitudinal gradient. The microbiome communities were represented by a wide range of operational taxonomic units and relative abundances. Highly abundant taxa were more related and shared across most sites and did not vary with geographic distance, thus, like , revealing no evidence for dispersal limitation. High phylogenetic relatedness, both within and across lakes, indicates that microbiome bacteria with similar functional potential were associated with all blooms. While and the microbiome bacteria shared many genes, whole-community metagenomic analysis revealed a suite of biochemical pathways that could be considered complementary. Our results demonstrate a high degree of similarity across global blooms, thereby providing initial support for the hypothesized interactome.

摘要

细菌在水生系统的功能和多样性中发挥着关键作用,但除了对特定水华系统的研究外,对于与有害蓝藻水华(cyanoHABs)相关的细菌的多样性或生物地理学知之甚少。已知蓝藻水华物种会塑造细菌群落组成,并依赖相关细菌提供的功能,从而形成了假设的蓝藻水华相互作用组,这是一个由协同和相互作用的细菌物种共同进化的群落,每个物种对于其他物种的成功都是必不可少的。在这里,我们调查了四大洲12个湖泊水华期间相关的微生物组,作为对假设的蓝藻水华相互作用组的初步测试。我们预测全球范围内水华的微生物组组成和功能潜力将相似。我们的结果通过16S rRNA序列相似性揭示,表明蓝藻水华在跨越280°经度和90°纬度梯度的湖泊中具有世界性分布。微生物组群落由广泛的操作分类单元和相对丰度代表。高度丰富的分类群在大多数地点之间关系更密切且有共享,并且不随地理距离变化,因此,与蓝藻水华一样,没有证据表明存在扩散限制。湖泊内部和湖泊之间的高度系统发育相关性表明,具有相似功能潜力的微生物组细菌与所有水华相关。虽然蓝藻水华和微生物组细菌共享许多基因,但全群落宏基因组分析揭示了一系列可被视为互补的生化途径。我们的结果证明了全球蓝藻水华之间的高度相似性,从而为假设的蓝藻水华相互作用组提供了初步支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7c1/7003799/cab5383d85e1/LNO-65-S194-g001.jpg

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