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高化学亲和力提高了生化振荡的鲁棒性。

High chemical affinity increases the robustness of biochemical oscillations.

机构信息

Department of Chemistry and The James Franck Institute, University of Chicago, Chicago, Illinois 60637, USA.

出版信息

Phys Rev E. 2020 Jan;101(1-1):012410. doi: 10.1103/PhysRevE.101.012410.

Abstract

Biochemical oscillations are ubiquitous in nature and allow organisms to properly time their biological functions. In this paper, we consider minimal Markov state models of nonequilibrium biochemical networks that support oscillations. We obtain analytical expressions for the coherence and period of oscillations in these networks. These quantities are expected to depend on all details of the transition rates in the Markov state model. However, our analytical calculations reveal that driving the system out of equilibrium makes many of these details-specifically, the location and arrangement of the transition rates-irrelevant to the coherence and period of oscillations. This theoretical prediction is confirmed by excellent agreement with numerical results. As a consequence, the coherence and period of oscillations can be robustly maintained in the presence of fluctuations in the irrelevant variables. While recent work has established that increasing energy consumption improves the coherence of oscillations, our findings suggest that it plays the additional role of making the coherence and the average period of oscillations robust to fluctuations in rates that can result from the noisy environment of the cell.

摘要

生化振荡在自然界中无处不在,使生物体能够正确地安排其生物功能的时间。在本文中,我们考虑了支持振荡的非平衡生化网络的最小马尔可夫状态模型。我们得到了这些网络中振荡的相干性和周期的解析表达式。这些量预计取决于马尔可夫状态模型中跃迁率的所有细节。然而,我们的分析计算表明,将系统驱动到非平衡状态会使许多细节——具体地说,跃迁率的位置和排列——与振荡的相干性和周期无关。这一理论预测与数值结果非常吻合。因此,在无关变量波动的情况下,振荡的相干性和周期可以得到稳健的维持。尽管最近的研究已经证实,增加能量消耗可以提高振荡的相干性,但我们的发现表明,它还起到了使振荡的相干性和平均周期对可能由细胞嘈杂环境引起的速率波动具有鲁棒性的额外作用。

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