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鉴定人类病原体中的一个转录 TPP 核糖开关

Characterization of a transcriptional TPP riboswitch in the human pathogen .

机构信息

Department of Microbiology, Tumor- and Cell Biology, BioClinicum, Karolinska University Hospital, Stockholm, Sweden.

Max Planck Unit for the Science of Pathogens, Berlin, Germany.

出版信息

RNA Biol. 2020 May;17(5):718-730. doi: 10.1080/15476286.2020.1727188. Epub 2020 Feb 20.

Abstract

Increasing evidence has demonstrated that regulatory RNA elements such as riboswitches (RS) play a pivotal role in the fine-tuning of bacterial gene expression. In this study, we investigated and characterized a novel transcriptional thiamine pyrophosphate (TPP) RS in the obligate human pathogen MC58 (serogroup B). This RS is located in the 5´ untranslated region upstream of gene, encoding a protein involved in TPP biosynthesis, an essential cofactor for all living beings. Primer extension revealed the transcriptional start site of . Northern blot analysis of mRNA and reporter gene studies confirmed the presence of an active TPP-sensing RS. Expression patterns of the wild-type RS and site-specific mutants showed that it is an OFF switch that controls transcription elongation of mRNA. Interestingly, the regulatory mechanism of the meningococcal RS resembles the Gram-positive RS rather than the Gram-negative RS. Therefore, the meningococcal RS represents a rare example of transcriptional RS in a Gram-negative bacterium. We further observed that the RS is actively involved in modulating gene expression in response to different growth media and to supplemented bacterial and eukaryotic cell lysates as possible sources of nutrients in the nasopharynx. Our results suggest that RS-mediated gene regulation could influence meningococcal fitness, through the fine-tuning of biosynthesis and scavenging of nutrients and cofactors, such as thiamine.

摘要

越来越多的证据表明,调节 RNA 元件(如核酶)在细菌基因表达的精细调控中起着关键作用。在这项研究中,我们研究并表征了一种新型的转录性硫胺素焦磷酸(TPP)核酶,它存在于专性人类病原体 MC58(B 群)中。该核酶位于编码 TPP 生物合成相关蛋白的基因上游非翻译区 5´端,TPP 是所有生物必需的辅酶。引物延伸实验揭示了 的转录起始位点。对 mRNA 的Northern blot 分析和报告基因研究证实了存在活性 TPP 感应核酶。野生型核酶和定点突变体的表达模式表明,它是一个 OFF 开关,控制 mRNA 的转录延伸。有趣的是,脑膜炎球菌 RS 的调控机制类似于革兰氏阳性菌的 RS,而不是革兰氏阴性菌的 RS。因此,脑膜炎球菌 RS 代表了革兰氏阴性菌中罕见的转录性核酶。我们进一步观察到,该核酶在响应不同生长培养基以及补充细菌和真核细胞裂解物时,积极参与调节基因表达,这些裂解物可能是鼻咽部营养物质的来源。我们的研究结果表明,RS 介导的基因调控可能通过精细调节生物合成和营养物质以及辅酶(如硫胺素)的摄取,影响脑膜炎球菌的适应性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6e9/7237195/4de93aa9f9ce/krnb-17-05-1727188-g001.jpg

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