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[聚合酶链反应反向斑点杂交技术在非综合征性耳聋基因检测中的应用]

[Application of PCR reverse dot blot in non-syndromic deafness gene detection].

作者信息

Liu Yalan, Sang Shushan, Ling Jie, He Chufeng, Mei Lingyun, Feng Yong

机构信息

Department of Otolaryngology Head and Neck Surgery,Xiangya Hospital,Central South University,Changsha,410008,China.

Xiangya Hospital,Central South University,Province Key Laboratory of Otolaryngology Critical Diseases.

出版信息

Lin Chuang Er Bi Yan Hou Tou Jing Wai Ke Za Zhi. 2020 Feb;34(2):153-157. doi: 10.13201/j.issn.1001-1781.2020.02.013.

DOI:10.13201/j.issn.1001-1781.2020.02.013
PMID:32086922
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10128405/
Abstract

To detect 20 common deafness gene mutations in non- syndromic deafness patients in China using PCR- RDB, and analyze and summarize the mutation data to explore the clinical value of this method. The PCR- RDB and Sanger sequencing were used to detect 20 common mutations of four deafness genes(, and ) in 500 patients with non- syndromic hearing loss . The Sanger sequencing was used to compare the sensitivity, specificity, positive predictive value, negative predictive value, and total coincidence rate of the deafness mutation detected by PCR- RDB. A total of 500 samples were detected. 147 wild- type samples, 81 homozygous mutant samples, 240 heterozygous mutant samples, 32 composite heterozygous mutant samples were detected using the PCR- RDB within the range of 20 gene mutations, which were identical to the Sanger sequencing results. GJB2 c.235delC and SLC26A4 c.919- 2 A>G are the most common hotspot mutations in this study, followed by mtDNA m. 1555 A>G. Compared with the Sanger sequencing method, the sensitivity, specificity, positive predictive value, negative predictive value, and total coincidence rate of the real- time fluorescence PCR melting curve method were 100%, and the Kappa value was one. PCR reverse dot-blot hybridization is a simple, rapid, sensitive and specific method for detecting 20 mutations of 4 common deafness genes in Chinese population, it is expected to be used in clinical detection of deafness genes in the future.

摘要

采用聚合酶链反应-反向点杂交(PCR-RDB)技术检测中国非综合征性耳聋患者20种常见耳聋基因突变情况,分析总结突变数据,探讨该方法的临床应用价值。应用PCR-RDB和桑格测序法对500例非综合征性听力损失患者的4个耳聋基因(、和)的20种常见突变进行检测。采用桑格测序法比较PCR-RDB检测耳聋突变的灵敏度、特异度、阳性预测值、阴性预测值及总符合率。共检测500份样本。在20个基因突变范围内,应用PCR-RDB检测出147份野生型样本、81份纯合突变样本、240份杂合突变样本、32份复合杂合突变样本,与桑格测序结果一致。GJB2基因c.235delC突变和SLC26A4基因c.919-2A>G突变是本研究中最常见的热点突变,其次是线粒体DNA m.1555A>G突变。与桑格测序法比较,实时荧光PCR熔解曲线法的灵敏度、特异度、阳性预测值、阴性预测值及总符合率均为100%,Kappa值为1。PCR反向点杂交技术是一种简便、快速、灵敏、特异的检测中国人4个常见耳聋基因20种突变的方法,有望用于今后耳聋基因的临床检测。

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本文引用的文献

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A rapid improved multiplex ligation detection reaction method for the identification of gene mutations in hereditary hearing loss.一种用于遗传性听力损失基因突变鉴定的快速改良多重连接依赖性探针扩增反应方法。
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A New Genetic Diagnostic for Enlarged Vestibular Aqueduct Based on Next-Generation Sequencing.一种基于下一代测序技术的大前庭导水管综合征新型基因诊断方法。
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Hum Genet. 2016 Aug;135(8):953-61. doi: 10.1007/s00439-016-1697-z. Epub 2016 Jun 25.
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Application of a New Genetic Deafness Microarray for Detecting Mutations in the Deaf in China.一种新型遗传性耳聋基因芯片在中国聋人群体中检测突变的应用。
PLoS One. 2016 Mar 28;11(3):e0151909. doi: 10.1371/journal.pone.0151909. eCollection 2016.
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Ethnic-specific spectrum of GJB2 and SLC26A4 mutations: their origin and a literature review.GJB2和SLC26A4基因突变的种族特异性谱:其起源及文献综述
Ann Otol Rhinol Laryngol. 2015 May;124 Suppl 1:61S-76S. doi: 10.1177/0003489415575060.
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Prevalence of mutations in GJB2, SLC26A4, and mtDNA in children with severe or profound sensorineural hearing loss in southwestern China.中国西南部重度或极重度感音神经性听力损失儿童中GJB2、SLC26A4和线粒体DNA突变的患病率
Genet Test Mol Biomarkers. 2015 Jan;19(1):52-8. doi: 10.1089/gtmb.2014.0241.
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Genetics of hearing and deafness.听力和耳聋的遗传学。
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[A literature review of epidemiological studies on mutation hot spots of Chinese population with non-syndromic hearing loss].[中国非综合征性听力损失人群突变热点的流行病学研究文献综述]
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Frequency and spectrum of mitochondrial 12S rRNA variants in 440 Han Chinese hearing impaired pediatric subjects from two otology clinics.440 例中国汉族耳聋患儿线粒体 12S rRNA 变异的频率和频谱:来自两个耳科学门诊的研究。
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