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基于三维U-NET深度卷积神经网络的头颈部危及器官自动分割

[Automatic segmentation of head and neck organs at risk based on three-dimensional U-NET deep convolutional neural network].

作者信息

Dai Xiangkun, Wang Xiaoshen, Du Lehui, Ma Na, Xu Shouping, Cai Boning, Wang Shuxin, Wang Zhonguo, Qu Baolin

机构信息

Department of Radiotherapy, First Medical Center of PLA General Hospital, BeiJing 100853, P.R.China.

出版信息

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2020 Feb 25;37(1):136-141. doi: 10.7507/1001-5515.201903052.

Abstract

The segmentation of organs at risk is an important part of radiotherapy. The current method of manual segmentation depends on the knowledge and experience of physicians, which is very time-consuming and difficult to ensure the accuracy, consistency and repeatability. Therefore, a deep convolutional neural network (DCNN) is proposed for the automatic and accurate segmentation of head and neck organs at risk. The data of 496 patients with nasopharyngeal carcinoma were reviewed. Among them, 376 cases were randomly selected for training set, 60 cases for validation set and 60 cases for test set. Using the three-dimensional (3D) U-NET DCNN, combined with two loss functions of Dice Loss and Generalized Dice Loss, the automatic segmentation neural network model for the head and neck organs at risk was trained. The evaluation parameters are Dice similarity coefficient and Jaccard distance. The average Dice Similarity coefficient of the 19 organs at risk was 0.91, and the Jaccard distance was 0.15. The results demonstrate that 3D U-NET DCNN combined with Dice Loss function can be better applied to automatic segmentation of head and neck organs at risk.

摘要

危及器官的分割是放射治疗的重要组成部分。当前的手动分割方法依赖于医生的知识和经验,这非常耗时且难以确保准确性、一致性和可重复性。因此,提出了一种深度卷积神经网络(DCNN)用于对头颈部危及器官进行自动且准确的分割。回顾了496例鼻咽癌患者的数据。其中,随机选择376例作为训练集,60例作为验证集,60例作为测试集。使用三维(3D)U-Net DCNN,结合Dice损失和广义Dice损失这两种损失函数,训练了头颈部危及器官的自动分割神经网络模型。评估参数为Dice相似系数和杰卡德距离。19个危及器官的平均Dice相似系数为0.91,杰卡德距离为0.15。结果表明,3D U-Net DCNN结合Dice损失函数能够更好地应用于头颈部危及器官的自动分割。

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