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下一代测序技术在血型分型中的应用

Next-Generation Sequencing Technologies in Blood Group Typing.

作者信息

Fürst Daniel, Tsamadou Chrysanthi, Neuchel Christine, Schrezenmeier Hubert, Mytilineos Joannis, Weinstock Christof

机构信息

Institute for Clinical Transfusion Medicine and Immunogenetics Ulm, German Red Cross Blood Transfusion Service, Baden Wuerttemberg/Hessen, and University Hospital Ulm, Ulm, Germany.

Institute of Transfusion Medicine, University of Ulm, Ulm, Germany.

出版信息

Transfus Med Hemother. 2020 Feb;47(1):4-13. doi: 10.1159/000504765. Epub 2019 Dec 11.

Abstract

Sequencing of the human genome has led to the definition of the genes for most of the relevant blood group systems, and the polymorphisms responsible for most of the clinically relevant blood group antigens are characterized. Molecular blood group typing is used in situations where erythrocytes are not available or where serological testing was inconclusive or not possible due to the lack of antisera. Also, molecular testing may be more cost-effective in certain situations. Molecular typing approaches are mostly based on either PCR with specific primers, DNA hybridization, or DNA sequencing. Particularly the transition of sequencing techniques from Sanger-based sequencing to next-generation sequencing (NGS) technologies has led to exciting new possibilities in blood group genotyping. We describe briefly the currently available NGS platforms and their specifications, depict the genetic background of blood group polymorphisms, and discuss applications for NGS approaches in immunohematology. As an example, we delineate a protocol for large-scale donor blood group screening established and in use at our institution. Furthermore, we discuss technical challenges and limitations as well as the prospect for future developments, including long-read sequencing technologies.

摘要

人类基因组测序已明确了大多数相关血型系统的基因,且已鉴定出导致大多数临床相关血型抗原的多态性。在无法获得红细胞的情况下,或由于缺乏抗血清导致血清学检测结果不确定或无法进行时,可采用分子血型分型。此外,在某些情况下,分子检测可能更具成本效益。分子分型方法主要基于使用特异性引物的聚合酶链反应(PCR)、DNA杂交或DNA测序。特别是测序技术从基于桑格测序法向新一代测序(NGS)技术的转变,为血型基因分型带来了令人兴奋的新可能性。我们简要介绍目前可用的NGS平台及其规格,描述血型多态性的遗传背景,并讨论NGS方法在免疫血液学中的应用。作为一个例子,我们描述了我们机构建立并正在使用的大规模供血者血型筛查方案。此外,我们还讨论了技术挑战和局限性以及未来发展前景,包括长读长测序技术。

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Next-Generation Sequencing Technologies in Blood Group Typing.下一代测序技术在血型分型中的应用
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